Structure #85212

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	+
Position	45,998,143 - 45,998,258
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	80.8
Columns	120
Mean single MFE	-43.21
Consensus MFE	-27.66
Combinations/base pair	55 / 36 = 1.53
SCI	0.64
z-score	-2.99
RNA class probability	0.99453

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.80
 Mean single sequence MFE: -43.21
 Consensus MFE: -27.66
 Energy contribution: -26.10
 Covariance contribution:  -1.56
 Mean z-score:  -2.99
 Structure conservation index:   0.64
 SVM decision value:   2.49
 SVM RNA-class probability: 0.994530
 Prediction: RNA

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>hg17.chr17/45998143-45998258
ACUCAUUUGUGGAGAUAACAUGCUCUAGUUCUCUCUCCCAGGAGGGAGGAAAGGAGGAGGGAUGGAAGUGGGGUUCCUCUCUCUGCCGUUUCCUUUUUCUCUGCUUUUGAUGGUG
((.((((.(..((((.......((((..(((((((((....)))))))))..))))(((((((((.((.((((....)))).)).))).))))))..))))..)....)))))). ( -43.00)
>canFam1.chr9/19146439-19146553
ACUCAGUUGUACAGAUAACAUGCUCUGGUUCUCUCUCCUGGAGGGAGAAGAGGAGGAGGGAUGGAAGUGGGUUUCCUCGCCCUGCCAUUUCCUUUUUCUCUGCUUUUGAUGGUG
..((((..(((((((........)))).(((((((((...)))))))))(((((((((((((((....((((......))))..))).)))))))))))))))..))))..... ( -42.20)
>mm5.chr11/27508663-27508549
ACUCAUUUGUGGAUAUAGCAUGCUCUAUUUCCCUCUCCCAGGAAAGAGAGAAGGGGGGAGGGAUGGUAGAGAGGUCUGCUUCUGCUGUUCUCGCUUUCUCUGCUUUUGAUGGUG
((.((((.(..((...(((....((((((((((((((((..............)))))))))).))))))((((...((....))...)))))))...))..)....)))))). ( -40.34)
>rn3.chr10/27610871-27610754
ACUCAUUUGUGGAUAUAACAUGCUCUAUUUCCCUCUCUUUCCCAGGAAAGAGAGGAGGGGGAGGGAUGGUAGAGAGGUCUGCUUCUGCCAUUCUCUCUUUCUCUGCUUUUGAUGGUG
((.((((.(..((..................((((((((((....)))))))))).(..(((((((((((((((........))))))))))).))))..)))..)....)))))). ( -47.30)
>consensus
ACUCAUUUGUGGAGAUAACAUGCUCUAGUUCCCUC____UCCCAGGAAAGAG_AAAAGGAGGAGGGAUGGAAGAGAGGU__CUCCCUCUGCCAUUCCCUCUUUCUCUGCUUUUGAUGGUG
..........(((((((........))))))).........(((.(((((....(((((((((((((((((...((((......)))).)))).))))))))))))).)))))..))).. (-27.66 = -26.10 +  -1.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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