Structure #85218

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	+
Position	45,998,179 - 45,998,297
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.29
Columns	120
Mean single MFE	-52.12
Consensus MFE	-45.2
Combinations/base pair	55 / 38 = 1.45
SCI	0.87
z-score	-3.34
RNA class probability	0.998713

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.29
 Mean single sequence MFE: -52.12
 Consensus MFE: -45.20
 Energy contribution: -42.45
 Covariance contribution:  -2.75
 Mean z-score:  -3.34
 Structure conservation index:   0.87
 SVM decision value:   3.20
 SVM RNA-class probability: 0.998713
 Prediction: RNA

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>hg17.chr17/45998179-45998297
CCCAGGAGGGAGGAAAGGAGGAGGGAUGGAAGUGGGGUUCCUCUCUCUGCCGUUUCCUUUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAUCCUCCCCUCUCCUACCCC
..((((((((((((((((.(((((((.((((......))))))))))).)).))))))))))).)))........((((((..(.((((((..........)))))).).)))))).. ( -53.30)
>canFam1.chr9/19146475-19146593
CCUGGAGGGAGAAGAGGAGGAGGGAUGGAAGUGGGUUUCCUCGCCCUGCCAUUUCCUUUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAGCCUCCCCUCUCCUACCCAC
....(((((...((((((((((((((((....((((......))))..))).))))))))))))).)))))...((((((..(.((((((..........)))))).).))))))... ( -50.40)
>mm5.chr11/27508702-27508585
CCCAGGAAAGAGAGAAGGGGGGAGGGAUGGUAGAGAGGUCUGCUUCUGCUGUUCUCGCUUUCUCUGCUUUUGAUGGUGGGUUAUGGGGAGAAGAAAGAUCCUCCCCUCUCCUGCUCC
..((.((((((((((((((((((.((..((((((....))))))....)).))))).)))))))).)))))..))(..((....((((((..........))))))...))..)... ( -46.00)
>rn3.chr10/27610910-27610794
CCCAGGAAAGAGAGGAGGGGGAGGGAUGGUAGAGAGGUCUGCUUCUGCCAUUCUCUCUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGGAGAAAGAUCCUCCCCUCUCCUGCUCC
..((...(((((.((((..(((((((((((((((........))))))))))).))))..)))).)))))..))(..((..(.((((((((......)))))))).).))..)... ( -58.80)
>consensus
CCCAGGAAAGAG_AAAAGGAGGAGGGAUGGAAGAGAGGU__CUCCCUCUGCCAUUCCCUCUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAUCCUCCCCUCUCCUACCCC_
.....(((((....(((((((((((((((((...((((......)))).)))).))))))))))))).)))))...((((((....((((((..........))))))...))))))... (-45.20 = -42.45 +  -2.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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