Structure #85220

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	45,998,179 - 45,998,297
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.29
Columns	120
Mean single MFE	-39.18
Consensus MFE	-25.59
Combinations/base pair	39 / 31 = 1.26
SCI	0.65
z-score	-2.51
RNA class probability	0.941641

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.29
 Mean single sequence MFE: -39.19
 Consensus MFE: -25.59
 Energy contribution: -26.77
 Covariance contribution:   1.19
 Mean z-score:  -2.51
 Structure conservation index:   0.65
 SVM decision value:   1.30
 SVM RNA-class probability: 0.941641
 Prediction: RNA

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>hg17.chr17/45998297-45998179
GGGGUAGGAGAGGGGAGGAUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGGAAACGGCAGAGAGAGGAACCCCACUUCCAUCCCUCCUCCUUUCCUCCCUCCUGGG
((((.(((((((((((((.(((((((((((.......................)))))...(....)....))))))((((......))))...))))).))))))))))))...... ( -42.40)
>canFam1.chr9/19146593-19146475
GUGGGUAGGAGAGGGGAGGCUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGGAAAUGGCAGGGCGAGGAAACCCACUUCCAUCCCUCCUCCUCUUCUCCCUCCAGG
((((((.(((((((..((...))..))))))).....))))))...........(((((..((((...((.((((...((((......))))..)))))))))).)))))........ ( -41.10)
>mm5.chr11/27508585-27508702
GGAGCAGGAGAGGGGAGGAUCUUUCUUCUCCCCAUAACCCACCAUCAAAAGCAGAGAAAGCGAGAACAGCAGAAGCAGACCUCUCUACCAUCCCUCCCCCCUUCUCUCUUUCCUGGG
((((.(((((.(((((((..(((((((..........................))))))).((((...((....)).....)))).......))))))).)))))))))........ ( -32.57)
>rn3.chr10/27610794-27610910
GGAGCAGGAGAGGGGAGGAUCUUUCUCCUCCCCACAACCCACCAUCAAAAGCAGAGAAAGAGAGAAUGGCAGAAGCAGACCUCUCUACCAUCCCUCCCCCUCCUCUCUUUCCUGGG
((((.(((((.(((((((.((((((((..........................))))))))((((...((....)).....)))).......))))))))))))))))........ ( -40.67)
>consensus
_GGAGCAGGAGAGGGGAGGAUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGAAAACGGCAGAAGCAG__ACCCCACUACCAUCCCUCCCCCUCUC_CUCCCUCCUGGG
.....((((((.((((((((......))))))))....................(((.(((((((...((..((..(((........)))...))))...))))))).))).)))))).. (-25.59 = -26.77 +   1.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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