Structure #85222
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr17 |
| Strand | + |
| Position | 45,998,218 - 45,998,333 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 87.18 |
| Columns | 120 |
| Mean single MFE | -35.82 |
| Consensus MFE | -27.69 |
| Combinations/base pair | 25 / 22 = 1.14 |
| SCI | 0.77 |
| z-score | -2.03 |
| RNA class probability | 0.869877 |
This structure is part of cluster 44583
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.18 Mean single sequence MFE: -35.82 Consensus MFE: -27.69 Energy contribution: -27.00 Covariance contribution: -0.69 Mean z-score: -2.03 Structure conservation index: 0.77 SVM decision value: 0.87 SVM RNA-class probability: 0.869877 Prediction: RNA ###################################################################### >hg17.chr17/45998218-45998333 CCUCUCUCUGCCGUUUCCUUUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAUCCUCCCCUCUCCUACCCCCUCUUUGGGAUCCACUCCAGCCCGGACAGUCACCAU .......((((((.......................((((((..(.((((((..........)))))).).))))))(((.....))).............))).)))....... ( -32.10) >canFam1.chr9/19146513-19146633 CCUCGCCCUGCCAUUUCCUUUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAGCCUCCCCUCUCCUACCCACCUCCCCCUUUGGGAUCCACUCCAGGCCGGACAGUUGCCAU ....(.((.(((........................(((((((.(.((((((..........)))))).)....)))))))((((.....)))).........))).)).)......... ( -37.60) >mm5.chr11/27508740-27508623 CUGCUUCUGCUGUUCUCGCUUUCUCUGCUUUUGAUGGUGGGUUAUGGGGAGAAGAAAGAUCCUCCCCUCUCCUGCUCCCACCCUUUGGGAUCCACUCCAGCCCGGACAGUCACCAU ........(((((((..(((...............((((((....((((((..((.......))..))))))....)))))).....(((.....))))))..)))))))...... ( -34.40) >rn3.chr10/27610948-27610831 CUGCUUCUGCCAUUCUCUCUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGGAGAAAGAUCCUCCCCUCUCCUGCUCCCACCCUUUGGGAUCCACUCCAGCCCGGACAGUCACCAU (((.(((.((((((..................))))))((((((.((((((((......))))))))........(((((.....))))).......))))))))))))....... ( -39.17) >consensus _CUCCCUCUGCCAUUCCCUCUUUCUCUGCUUUUGAUGGUGGGUUGUGGGGAGAAGAAAGAUCCUCCCCUCUCCUACCCC___CACCCUUUGGGAUCCACUCCAGCCCGGACAGUCACCAU .......(((((........................((((((....((((((..........))))))...))))))...........(((((......)))))...)).)))....... (-27.69 = -27.00 + -0.69)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
