Structure #85224

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	45,998,218 - 45,998,333
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	87.18
Columns	120
Mean single MFE	-39.8
Consensus MFE	-25.83
Combinations/base pair	29 / 27 = 1.07
SCI	0.65
z-score	-1.79
RNA class probability	0.554793

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.18
 Mean single sequence MFE: -39.80
 Consensus MFE: -25.83
 Energy contribution: -26.14
 Covariance contribution:   0.31
 Mean z-score:  -1.79
 Structure conservation index:   0.65
 SVM decision value:   0.04
 SVM RNA-class probability: 0.554793
 Prediction: RNA

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>hg17.chr17/45998333-45998218
AUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGAGGGGGUAGGAGAGGGGAGGAUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGGAAACGGCAGAGAGAGG
.......(((((..((.(((.(((((((((......))))).(((((((..((...))..)))))))))))...)))))..................(....))))))....... ( -38.40)
>canFam1.chr9/19146633-19146513
AUGGCAACUGUCCGGCCUGGAGUGGAUCCCAAAGGGGGAGGUGGGUAGGAGAGGGGAGGCUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGGAAAUGGCAGGGCGAGG
..(....)(((((.(((.(((.....)))....(((((..(((((.((((((((((....)))))))))).)))))..))).))........................))).)))))... ( -44.60)
>mm5.chr11/27508623-27508740
AUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGGGUGGGAGCAGGAGAGGGGAGGAUCUUUCUUCUCCCCAUAACCCACCAUCAAAAGCAGAGAAAGCGAGAACAGCAGAAGCAG
.......((((....(((((.((((.(((((.....)))))........((((((((......)))))))).....))))).......((.......)).....))))....)))) ( -37.00)
>rn3.chr10/27610831-27610948
AUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGGGUGGGAGCAGGAGAGGGGAGGAUCUUUCUCCUCCCCACAACCCACCAUCAAAAGCAGAGAAAGAGAGAAUGGCAGAAGCAG
...((..(((.(((..(((((.....))).....((((((..(....).((((((((......))))))))....))))))...................))..))))))..)).. ( -39.20)
>consensus
AUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGGGUG___GGAGCAGGAGAGGGGAGGAUCUUUCUUCUCCCCACAACCCACCAUCAAAAGCAGAGAAAAAGAAAACGGCAGAAGCAG_
.......(((.(((.(((.((((((.((((.................)).))((((((((......)))))))).....))))..))...)))..............))))))....... (-25.83 = -26.14 +   0.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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