Structure #85237

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	45,998,296 - 45,998,413
Number of sequences	3
Organisms	human, dog, mouse, rat
Mean pairwise identity	94.13
Columns	120
Mean single MFE	-46.37
Consensus MFE	-44.21
Combinations/base pair	37 / 35 = 1.06
SCI	0.95
z-score	-2.45
RNA class probability	0.964564

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 3
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  94.13
 Mean single sequence MFE: -46.37
 Consensus MFE: -44.21
 Energy contribution: -43.77
 Covariance contribution:  -0.44
 Mean z-score:  -2.45
 Structure conservation index:   0.95
 SVM decision value:   1.57
 SVM RNA-class probability: 0.964564
 Prediction: RNA

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>hg17.chr17/45998413-45998296
CAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGUGACUAUGAGAGACCUGUGCAGUCACAUGUCUACUGUUGCUAUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGAG
....((..(....)..))((((..(((.(((..((((((..((......((((.((((....)))).))))...))..))))))..))).(((.....))))))..))))...... ( -43.80)
>canFam1.chr9/19146713-19146593
CAUGGCAACCAAGGGAACGGGGGACACUGGUUGCCAUAGUGACUAUGAGAGACCUGUGCAGUCACAUGUCUACUGUUGCUAUGGCAACUGUCCGGCCUGGAGUGGAUCCCAAAGGGGGAG
((.(((..((..(....).))(((((...((((((((((..((......((((.((((....)))).))))...))..))))))))))))))).))))).......((((.....)))). ( -49.30)
>mm5.chr11/27508701-27508820
CAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGUGACUAUGAGAGACCUGUGCGGUCACAUGUCUACUGUUGCUAUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGGGUG
.......(((..(....)((((..(((.(((..((((((..((......((((.((((....)))).))))...))..))))))..))).(((.....))))))..))))....))). ( -46.00)
>consensus
CAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGUGACUAUGAGAGACCUGUGCAGUCACAUGUCUACUGUUGCUAUGGUGACUGUCCGGGCUGGAGUGGAUCCCAAAGGG_G__
..(((...))).(....)((((..(((.(((((((((((..((......((((.((((....)))).))))...))..))))))))))).(((.....))))))..)))).......... (-44.21 = -43.77 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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