Structure #85241

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	+
Position	45,998,333 - 45,998,449
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	95.63
Columns	120
Mean single MFE	-33.23
Consensus MFE	-31.88
Combinations/base pair	34 / 33 = 1.03
SCI	0.96
z-score	-1.69
RNA class probability	0.821239

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  95.63
 Mean single sequence MFE: -33.23
 Consensus MFE: -31.88
 Energy contribution: -31.62
 Covariance contribution:  -0.25
 Mean z-score:  -1.69
 Structure conservation index:   0.96
 SVM decision value:   0.68
 SVM RNA-class probability: 0.821239
 Prediction: RNA

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>hg17.chr17/45998333-45998449
AGCAACAGUAGACAUGUGACUGCACAGGUCUCUCAUAGUCACUAUGGCAACCAGUGUCCCCCGUUCCCUUGGUUACCAUGGGGAUCUGUCACAUGGUUUUCCCCCAACCUGAUAAC
.....(((....((((((((.((((.(((..(.(((((...))))))..))).)))).....((((((.(((...))).))))))..))))))))(((.......))))))..... ( -32.00)
>canFam1.chr9/19146633-19146749
AGCAACAGUAGACAUGUGACUGCACAGGUCUCUCAUAGUCACUAUGGCAACCAGUGUCCCCCGUUCCCUUGGUUGCCAUGGGGAUUUGUCACAUGGUUUCCCCCCAACCUGAUAAC
......((.((((.((((....)))).))))))....(((.(((((((((((((..............))))))))))))).)))((((((...((((.......)))))))))). ( -34.14)
>mm5.chr11/27508860-27508740
AGCAACAGUAGACAUGUGACCGCACAGGUCUCUCAUAGUCACUAUGGCAACCAGUGUCCCCCGUUCCCUUGGUUACCAUGGGGAUCUGUCACAUGGUUCCCCCCCCCCCAACCUGAUAAC
.....(((..((((((.((((.....))))...))).))).....((.((((((((.(....((((((.(((...))).))))))..).))).))))).))...........)))..... ( -33.80)
>rn3.chr10/27611065-27610948
AGCAACAGUAGACAUGUGACCGCACAGGUCUCUCAUAGUCACUAUGGCAACCAGUGUCCCCCGUUCCCUUGGUUACCAUGGGGAUCUGUCACAUGGUUUUUCCCCCAACCUGAUAAC
.((...(((.((((((.((((.....))))...))).))))))...))((((((((.(....((((((.(((...))).))))))..).))).)))))................... ( -33.00)
>consensus
AGCAACAGUAGACAUGUGACCGCACAGGUCUCUCAUAGUCACUAUGGCAACCAGUGUCCCCCGUUCCCUUGGUUACCAUGGGGAUCUGUCACAUGGUU____UCCCCCCAACCUGAUAAC
.((...(((.((((((.((((.....))))...))).))))))...))((((((((.(....((((((.(((...))).))))))..).))).)))))...................... (-31.88 = -31.62 +  -0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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