Structure #85253

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	45,998,373 - 45,998,489
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	91.41
Columns	120
Mean single MFE	-37.3
Consensus MFE	-31.3
Combinations/base pair	37 / 33 = 1.12
SCI	0.84
z-score	-1.42
RNA class probability	0.538603

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  91.41
 Mean single sequence MFE: -37.30
 Consensus MFE: -31.30
 Energy contribution: -31.43
 Covariance contribution:   0.13
 Mean z-score:  -1.42
 Structure conservation index:   0.84
 SVM decision value:   0.01
 SVM RNA-class probability: 0.538603
 Prediction: RNA

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>hg17.chr17/45998489-45998373
UUGUCCUUAUGCAGGGGAGGAGAAUCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAAAACCAUGUGACAGAUCCCCAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGU
.............(((((.........((....))((((((((.((.........)).)))).)))).....)))))((((((((((.(....).(....)..))))))))))... ( -39.00)
>canFam1.chr9/19146788-19146673
CUGUCCUCAUGCAGAGAAAGGAAAGCAGGAGACCCACAGGUUAUCAGGUUGGGGGGAAACCAUGUGACAAAUCCCCAUGGCAACCAAGGGAACGGGGGACACUGGUUGCCAUAGU
.(((((((.(((............))).))).(((((..(....)..).))))((....))....)))).......((((((((((.(....).(....)..))))))))))... ( -36.80)
>mm5.chr11/27508780-27508900
UUGUCCUUAUGCAAGGAAAAAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGGGGGGGAACCAUGUGACAGAUCCCCAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGU
...(((((....)))))..........((....))....((((((((...((((((..((....))..........))))))))))))))..((.(((.((.....)).))).))..... ( -38.50)
>rn3.chr10/27610988-27611105
UUGUCCUUAUGCAAGGAAAGAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAAAAACCAUGUGACAGAUCCCCAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGU
...(((((....)))))..........((....))....((((((((.....(((((................))))).))))))))..((.(((.((.....)).))).))..... ( -34.89)
>consensus
UUGUCCUUAUGCAAGGAAAGAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAA____AACCAUGUGACAGAUCCCCAUGGUAACCAAGGGAACGGGGGACACUGGUUGCCAUAGU
...(((((....)))))......(((..((.((((....)))).))..))).(((((......((...))......)))))((((((((((.(....).(....)..))))))))))... (-31.30 = -31.43 +   0.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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