Structure #85260
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr17 |
| Strand | - |
| Position | 45,998,413 - 45,998,519 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 79.29 |
| Columns | 120 |
| Mean single MFE | -41.05 |
| Consensus MFE | -26.09 |
| Combinations/base pair | 35 / 28 = 1.25 |
| SCI | 0.64 |
| z-score | -3.05 |
| RNA class probability | 0.997974 |
This structure is part of cluster 44583
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.29 Mean single sequence MFE: -41.05 Consensus MFE: -26.09 Energy contribution: -26.15 Covariance contribution: 0.06 Mean z-score: -3.05 Structure conservation index: 0.64 SVM decision value: 2.97 SVM RNA-class probability: 0.997974 Prediction: RNA ###################################################################### >hg17.chr17/45998519-45998413 ACAUGAUCUCCCCUGACUGAGGCUGUUGUCUUGUCCUUAUGCAGGGGAGGAGAAUCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAAAACCAUGUGACAGAUCCC (((((...(((((..(((.((.((((..((((.(((((.....))))).))))....((....)).)))).))....)))..)))))....))))).......... ( -39.20) >canFam1.chr9/19146818-19146713 ACAAGAACUCCCCUUAACCAGACUGCCAUCCUGUCCUCAUGCAGAGAAAGGAAAGCAGGAGACCCACAGGUUAUCAGGUUGGGGGGAAACCAUGUGACAAAUCCC (((.(...(((((((((((...((((..((((...(((.....)))..))))..))))((((((....)))).)).)))))))))))...).))).......... ( -37.20) >mm5.chr11/27508820-27508940 ACCCCCUUACACAUUCUUUCCCCUUGCCCAGACUGCUCUCUUGUCCUUAUGCAAGGAAAAAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGGGGGGGAACCAUGUGACAGAUCCC .........(((((..(((((((((.(((((.(((((.((((.(((((....)))))..)))))))))((.((((....)))).))...))))).)))))))))..)))))......... ( -46.90) >rn3.chr10/27611028-27611145 ACCCCCUUACACAUUCUCUCCCCUUGCCCAGACUGCUCUCUUGUCCUUAUGCAAGGAAAGAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAAAAACCAUGUGACAGAUCCC .........(((((....((((((.(((....((((((((((.(((((....)))))))))).)))))((.((((....)))).)).))).))))))......)))))......... ( -40.90) >consensus __________ACAUGAUCUCCCCUUACCCAGACUGCUCUCUUGUCCUUAUGCAAGGAAAGAGAAGCAGGGAGACCCACAGGUUAUCAGGUUGGGGGAA____AACCAUGUGACAGAUCCC ..................(((((..(((....(((((.((((.(((((....)))))..)))))))))((.((((....)))).)).)))..)))))....................... (-26.09 = -26.15 + 0.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
