Structure #85261
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr17 |
| Strand | + |
| Position | 45,998,449 - 45,998,554 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 75.18 |
| Columns | 118 |
| Mean single MFE | -39.25 |
| Consensus MFE | -20.89 |
| Combinations/base pair | 39 / 29 = 1.34 |
| SCI | 0.53 |
| z-score | -2.18 |
| RNA class probability | 0.877521 |
This structure is part of cluster 44583
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 118 Columns: 118 Strand: + Mean pairwise identity: 75.18 Mean single sequence MFE: -39.25 Consensus MFE: -20.89 Energy contribution: -22.20 Covariance contribution: 1.31 Mean z-score: -2.18 Structure conservation index: 0.53 SVM decision value: 0.90 SVM RNA-class probability: 0.877521 Prediction: RNA ###################################################################### >hg17.chr17/45998449-45998554 CUGUGGGUCUCCCUGAUUCUCCUCCCCUGCAUAAGGACAAGACAACAGCCUCAGUCAGGGGAGAUCAUGUGAGAGGGGUCUUUUUAAUUACCAUGACAACAAAUC .(((..(((.((((.((....((((((((....(((.(.........))))....)))))))).....)).)).))(((..........)))..))).))).... ( -26.30) >canFam1.chr9/19146749-19146853 CUGUGGGUCUCCUGCUUUCCUUUCUCUGCAUGAGGACAGGAUGGCAGUCUGGUUAAGGGGAGUUCUUGUGUGAGGGGUCCCUUAAAUUGCCAUAGCAACAAAUC ((((((.....(((((.(((((((((.....))))).)))).)))))...((((.((((((.(((((....))))).)))))).)))).))))))......... ( -38.80) >mm5.chr11/27508978-27508860 CUGUGGGUCUCCCUGCUUCUUUUUCCUUGCAUAAGGACAAGAGAGCAGUCUGGGCAAGGGGAAAGAAUGUGUAAGGGGGUGGGGAGGGGUGUCUCUUCAGUUUCCAUGGCAACAAAUC (((((((.((((((((((((((..((((((....((((.........))))..))))))..)))))).))...))))))((((((((....))))))))...)))))))......... ( -46.00) >rn3.chr10/27611180-27611065 CUGUGGGUCUCCCUGCUUCUCUUUCCUUGCAUAAGGACAAGAGAGCAGUCUGGGCAAGGGGAGAGAAUGUGUAAGGGGGUGGGGGGUGUCUCUUCAAUCACCAUGGCAACAAAUC ((((((..((((((((((((((..((((((....((((.........))))..))))))..)))))).))...))))))(((((((...)))))))....))))))......... ( -45.90) >consensus CUGUGGGUCUCCCUGCUUCUCUUUCCCUGCAUAAGGACAAGAGAGCAGUCUGGGCAAGGGGAGAGAAUGU_____________GAGAGGGGUCUCUUCAAUUACCAUGGCAACAAAUC ((((((..........((((((((((((((....((((.........))))..)))))))))))))).................(((((....))))).....))))))......... (-20.89 = -22.20 + 1.31)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
