Structure #85267

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	+
Position	45,998,489 - 45,998,594
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	66.84
Columns	120
Mean single MFE	-37.8
Consensus MFE	-14.82
Combinations/base pair	33 / 22 = 1.50
SCI	0.39
z-score	-2.27
RNA class probability	0.970579

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  66.84
 Mean single sequence MFE: -37.80
 Consensus MFE: -14.82
 Energy contribution: -15.82
 Covariance contribution:   1.00
 Mean z-score:  -2.27
 Structure conservation index:   0.39
 SVM decision value:   1.66
 SVM RNA-class probability: 0.970579
 Prediction: RNA

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>hg17.chr17/45998489-45998594
GACAACAGCCUCAGUCAGGGGAGAUCAUGUGAGAGGGGUCUUUUUAAUUACCAUGACAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUCGUUAUGGCAAC
.......(((...(.((((((.((...((((...(..(((..............)))..).......((((....)))).)))))))))))).).....)))... ( -28.64)
>canFam1.chr9/19146788-19146893
GAUGGCAGUCUGGUUAAGGGGAGUUCUUGUGUGAGGGGUCCCUUAAAUUGCCAUAGCAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAAC
..((((......))))((((((.(((((....))))).))))))...((((((((((((((......((((....))))...........)))))))))))))). ( -36.13)
>mm5.chr11/27509018-27508900
GAGAGCAGUCUGGGCAAGGGGAAAGAAUGUGUAAGGGGGUGGGGAGGGGUGUCUCUUCAGUUUCCAUGGCAACAAAUCCACACCACCUGGUGACACAUUCUUCUGUUGUUAUGGCAAC
.......(((..(((((.(((..(((((((((.(((((((((((((((....))))))........((....))...)))).)).)))....)))))))))))).)))))..)))... ( -42.70)
>rn3.chr10/27611220-27611105
GAGAGCAGUCUGGGCAAGGGGAGAGAAUGUGUAAGGGGGUGGGGGGUGUCUCUUCAAUCACCAUGGCAACAAAUCCACACCACCUGGUGACACAUUCUCCUGUUGUUAUGGCAAC
.......(((..(((((.((((((..((((((..((((((((((((((..........)))).((....))..))).)))).)))....)))))))))))).)))))..)))... ( -45.50)
>galGal2.chr3_random/635311-635211
AGCCGUGGUCCUUGGAGGUCCCCAGAGGACAAACGCCUUUUAAGAGCCAUGGCAACUAAUCAGCCCUGCAUGGUGACAUCCCCACCAUCUCCAUGGCGAC
.(((((((..(((((((((((.....)))).......)))))))..))))))).........(((.((.((((((.......))))))...)).)))... ( -36.01)
>consensus
GAGAGCAGUCUGGGUAAGGGGAGAUCAUGU_____________GAGG__GGGGUCUCUUCAAUUACCAUGGCAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAAC
.......(((..(((((.((((((...................((((......)))).........................((((....))))......)))))).)))))..)))... (-14.82 = -15.82 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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