Structure #85271

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	+
Position	45,998,518 - 45,998,632
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	76.94
Columns	120
Mean single MFE	-33.39
Consensus MFE	-14.55
Combinations/base pair	30 / 23 = 1.30
SCI	0.44
z-score	-2.43
RNA class probability	0.977296

This structure is part of cluster 44583

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.94
 Mean single sequence MFE: -33.39
 Consensus MFE: -14.55
 Energy contribution: -15.71
 Covariance contribution:   1.16
 Mean z-score:  -2.43
 Structure conservation index:   0.44
 SVM decision value:   1.79
 SVM RNA-class probability: 0.977296
 Prediction: RNA

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>hg17.chr17/45998518-45998632
GAGAGGGGUCUUUUUAAUUACCAUGACAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUCGUUAUGGCAACAGAAGAACAUCACACAGUGACAUACUGCCAUGUUCCCA
....((((((((((......(((((((...........(((....)))((((........)))))))))))....))))))((((....(((((...)))))..)))))))). ( -25.70)
>canFam1.chr9/19146817-19146931
GUGAGGGGUCCCUUAAAUUGCCAUAGCAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAACAGAGGAACAUCACACAGUGACAUAAGGCCAUGUUCCCA
((((...((.((((...((((((((((((((......((((....))))...........))))))))))))))..)))).)).))))...(..((((......))))..).. ( -35.63)
>mm5.chr11/27509056-27508940
GGGGAGGGGUGUCUCUUCAGUUUCCAUGGCAACAAAUCCACACCACCUGGUGACACAUUCUUCUGUUGUUAUGGCAACAGAAGAACAUCACACAGUGACAUAGUGCCGUGUUGCCA
(((((((....)))))))........((((((((......((((....)))).(((.((((((((((((....))))))))))))..((((...))))....)))...)))))))) ( -43.40)
>rn3.chr10/27611258-27611144
GGGGGGUGUCUCUUCAAUCACCAUGGCAACAAAUCCACACCACCUGGUGACACAUUCUCCUGUUGUUAUGGCAACAGAAGAACAUCACACAGUGACAUACUGCCAUGUUGCCA
....((((..........)))).((((((((......((((....)))).....((((.(((((((....))))))).)))).......(((((...)))))...)))))))) ( -34.80)
>galGal2.chr3_random/635351-635234
GAGGACAAACGCCUUUUAAGAGCCAUGGCAACUAAUCAGCCCUGCAUGGUGACAUCCCCACCAUCUCCAUGGCGACGGACCGAACAUCACAUAGCAACAUGUGCCUCCCGUACCCA
..((.................(((((((..........((...))((((((.......))))))..))))))).((((...((....(((((......)))))..))))))..)). ( -27.40)
>consensus
___GAGG__GGGGUCUCUUCAAUUACCAUGGCAACAAAUCCACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAACAGA_AGAACAUCACACAGUGACAUACUGC_CAUGUUCCCA
.........(((.............(((((((((((......((((....))))...........))))))))))).......................(((((.......)))))))). (-14.55 = -15.71 +   1.16) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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