Structure #85274
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr17 |
| Strand | + |
| Position | 45,998,554 - 45,998,672 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 75 |
| Columns | 120 |
| Mean single MFE | -35.94 |
| Consensus MFE | -20.47 |
| Combinations/base pair | 36 / 27 = 1.33 |
| SCI | 0.57 |
| z-score | -3.14 |
| RNA class probability | 0.999689 |
This structure is part of cluster 44583
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + h4?x Mean pairwise identity: 75.00 Mean single sequence MFE: -35.94 Consensus MFE: -20.47 Energy contribution: -20.19 Covariance contribution: -0.28 Mean z-score: -3.14 Structure conservation index: 0.57 SVM decision value: 3.89 SVM RNA-class probability: 0.999689 Prediction: RNA ###################################################################### >hg17.chr17/45998554-45998672 CACACCACCUGGUGACACAUCCUCCUGUCGUUAUGGCAACAGAAGAACAUCACACAGUGACAUACUGCCAUGUUCCCAAGGAAACAAGCCCUACUCUGAGAAGGGUGAAAGACCCCCC ..((((....))))...((((((.(((((.....)))..((((.((((((....(((((...)))))..))))))...(((........)))..)))))).))))))........... ( -28.60) >canFam1.chr9/19146853-19146971 CACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAACAGAGGAACAUCACACAGUGACAUAAGGCCAUGUUCCCAAGGAAACGAGCCCUACCCUGAGAAGGGUGAAAGACCCCCC .....(((.((((((....(((((.((((((....)))))))))))...)))).)))))......(((....((((...))))....))).((((((....))))))........... ( -36.30) >mm5.chr11/27509096-27508978 CACACCACCUGGUGACACAUUCUUCUGUUGUUAUGGCAACAGAAGAACAUCACACAGUGACAUAGUGCCGUGUUGCCAAGGAAACAAGCCCCACCCUGAAAAGGGUGAAAGACCCCCC .......(((((..((((.((((((((((((....))))))))))))..((((...)))).........))))..)).)))..........((((((....))))))........... ( -45.30) >rn3.chr10/27611298-27611180 CACACCACCUGGUGACACAUUCUCCUGUUGUUAUGGCAACAGAAGAACAUCACACAGUGACAUACUGCCAUGUUGCCAAGGAAACAAGCCCCACCCUGGGAAGGGUGAAAGAUCCCCC ..((((.(((((..(((..((((.(((((((....))))))).)))).......(((((...)))))...)))..)).)))........(((.....)))...))))........... ( -36.60) >galGal2.chr3_random/635363-635272 AGCCCUGCAUGGUGACAUCCCCACCAUCUCCAUGGCGACGGACCGAACAUCACAUAGCAACAUGUGCCUCCCGUACCCAUGGAAACGGGCC .((((...((((((.......)))))).(((((((..((((...((....(((((......)))))..))))))..)))))))...)))). ( -32.90) >consensus CACACCACCUGGUGACACAUCCUCCUGUUGUUAUGGCAACAGA_AGAACAUCACACAGUGACAUACUGC_CAUGUUCCCAAGGAAACAAGCCCCACCCUGAGAAGGGUGAAAGACCCCCC .....(((.((((((.........(((((((....)))))))........)))).)))))............((((.(....).)))).....((((((....))))))........... (-20.47 = -20.19 + -0.28)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
