Structure #87670

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Strand	-
Position	70,220,699 - 70,220,752
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.01
Columns	55
Mean single MFE	-23.3
Consensus MFE	-18.83
Combinations/base pair	31 / 22 = 1.41
SCI	0.81
z-score	-4.7
RNA class probability	0.999809

This structure is part of cluster 45900

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 55
 Columns: 55
 Strand: +
 Mean pairwise identity:  79.01
 Mean single sequence MFE: -23.30
 Consensus MFE: -18.83
 Energy contribution: -19.45
 Covariance contribution:   0.62
 Mean z-score:  -4.70
 Structure conservation index:   0.81
 SVM decision value:   4.13
 SVM RNA-class probability: 0.999809
 Prediction: RNA

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>hg17.chr17/70220752-70220699
CUCCUUCCUCUUUUAGUCUCUUUCACCCAUGGGAAGUGACUGAAGGAGGAAGU
...(((((((((((((((.(((((.......))))).))))))))))))))). ( -28.30)
>mm5.chr11/114805168-114805113
CUCCUUCCUCUUUUGGUGCUUUAUAUGCCAGCGGGAAGUGGCUAAAGGAGGAAGU
...(((((((((((((((((((...((....)).))))).)))))))))))))). ( -23.20)
>rn3.chr10/105223624-105223571
CUCCUUCCUCUUUUGCUUUUAUUUGCCAGCGGGAAGUGGCUAAAGGAGGAAGU
...((((((((((((((...((((.((...)).))))))).))))))))))). ( -19.70)
>canFam1.chr18/25056973-25056921
CUCCUUCCUCUUUUUGCUUACUCAUCAGUGAGAAGUGGCUGAAGGAGGAAGU
...(((((((((((.(((..((((....))))....))).))))))))))). ( -22.00)
>consensus
CUCCUUCCUCUUUUGGUCUUAUUCA__CCAGCGGGAAGUGGCUAAAGGAGGAAGU
...((((((((((((((((((((((......))))))).))))))))))))))). (-18.83 = -19.45 +   0.62) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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