Structure #89854
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Strand | + |
| Position | 29,015,031 - 29,015,141 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 90.82 |
| Columns | 120 |
| Mean single MFE | -22.15 |
| Consensus MFE | -18.07 |
| Combinations/base pair | 21 / 21 = 1.00 |
| SCI | 0.82 |
| z-score | -1.91 |
| RNA class probability | 0.940279 |
This structure is part of cluster 47135
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 90.82 Mean single sequence MFE: -22.15 Consensus MFE: -18.07 Energy contribution: -18.47 Covariance contribution: 0.40 Mean z-score: -1.91 Structure conservation index: 0.82 SVM decision value: 1.29 SVM RNA-class probability: 0.940279 Prediction: RNA ###################################################################### >hg17.chr18/29015031-29015141 GGAAAAAAAGUACAAUUGAUUGCGUGGCCAAAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUGCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCA ((.......(((........)))((((.........(((((((((((........((((.((........)).)))).....))))))))))).......))))...)). ( -22.41) >mm5.chr18/22403094-22403213 AGAAAAAAAAAAAAGCAAACUACAAUUGAUUGCGUGGCCAAAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCA (((((.........((((.(.......).)))).........)))))((((((((((........((((.((.......)).)))).....)))))))))).................. ( -19.79) >rn3.chr18/13670896-13671012 GGAAAAAAAAAGCAAACUACAAUUGAUUGCGUGGCCAAAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCA ((.........((((.(.......).)))).(((.........(((((((((((........((((.((.......)).)))).....))))))))))).......)))....)). ( -21.71) >canFam1.chr7/23795511-23795402 GGAAAAAAAGUACAAUUGAUUGCGUGGCCAAAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCA ((.......(((........)))((((.........(((((((((((........((((.((.......)).)))).....))))))))))).......))))...)). ( -22.11) >galGal2.chr2/105995099-105995208 GGGUGUGAAGUACAAUUUAUUGUGUGGCCAAAUUUUUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCA ((((.(((..(((((....)))))............(((((((((((........((((.((.......)).)))).....)))))))))))..)))))))........ ( -24.72) >consensus GGAAAAAAAG__________UACAAUUGAUUGCGUGGCCAAAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUU_CAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCA .................................((((.........(((((((((((........((((.((........)).)))).....))))))))))).......))))...... (-18.07 = -18.47 + 0.40)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
