Structure #89856
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Strand | - |
| Position | 29,015,031 - 29,015,141 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 90.82 |
| Columns | 120 |
| Mean single MFE | -28.76 |
| Consensus MFE | -26.88 |
| Combinations/base pair | 32 / 31 = 1.03 |
| SCI | 0.93 |
| z-score | -2.12 |
| RNA class probability | 0.998927 |
This structure is part of cluster 47135
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 90.82 Mean single sequence MFE: -28.76 Consensus MFE: -26.88 Energy contribution: -27.32 Covariance contribution: 0.44 Mean z-score: -2.12 Structure conservation index: 0.93 SVM decision value: 3.29 SVM RNA-class probability: 0.998927 Prediction: RNA ###################################################################### >hg17.chr18/29015141-29015031 UGGUUUGUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUGCAACAAAAAUCAGUAAGCAGGCAUGAACAGAAAUUUGGCCACGCAAUCAAUUGUACUUUUUUUCC (((((.((((((..(....(((((((((.((((((((((........))))......))))))))))))))).......)..))).))))))))................ ( -29.80) >mm5.chr18/22403213-22403094 UGGUUUCUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUGAACAAAAAUCAGUAAGCAGGCAUGAACAGAAAUUUGGCCACGCAAUCAAUUGUAGUUUGCUUUUUUUUUUUUCU (((...(..((((..(((..((((((((.((((((((((.......))))......)))))))))))))))))..))))..)))).((((.(.......).)))).............. ( -27.80) >rn3.chr18/13671012-13670896 UGGUUUCUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUGAACAAAAAUCAGUAAGCAGGCAUGAACAGAAAUUUGGCCACGCAAUCAAUUGUAGUUUGCUUUUUUUUUCC (((...(..((((..(((..((((((((.((((((((((.......))))......)))))))))))))))))..))))..)))).((((.(.......).))))........... ( -27.80) >canFam1.chr7/23795402-23795511 UGGUUUGUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUGAACAAAAAUCAGUAAGCAGGCAUGAACAGAAAUUUGGCCACGCAAUCAAUUGUACUUUUUUUCC (((((.((((((..(....(((((((((.((((((((((.......))))......))))))))))))))).......)..))).))))))))................ ( -29.50) >galGal2.chr2/105995208-105995099 UGGUUUGUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUGAACAAAAAUCAGUAAGCAGGCAUGAACAAAAAUUUGGCCACACAAUAAAUUGUACUUCACACCC .(((((((((((..(....(((((((((.((((((((((.......))))......))))))))))))))).......)..))).)))))......((.....))))). ( -28.90) >consensus UGGUUUGUGGGUUGAUGUAUUCAUGCCUUGUUUAUUUGUGAAAUG_AACAAAAAUCAGUAAGCAGGCAUGAACAGAAAUUUGGCCACGCAAUCAAUUGUA__________CUUUUUUUCC (((((.((((((..(....(((((((((.((((((((((........))))......))))))))))))))).......)..))).)))))))).......................... (-26.88 = -27.32 + 0.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
