Structure #89858
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Strand | + |
| Position | 29,015,061 - 29,015,181 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 97.32 |
| Columns | 120 |
| Mean single MFE | -20.1 |
| Consensus MFE | -18.28 |
| Combinations/base pair | 24 / 24 = 1.00 |
| SCI | 0.91 |
| z-score | -2.11 |
| RNA class probability | 0.9956 |
This structure is part of cluster 47135
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 97.32 Mean single sequence MFE: -20.10 Consensus MFE: -18.28 Energy contribution: -18.28 Covariance contribution: -0.00 Mean z-score: -2.11 Structure conservation index: 0.91 SVM decision value: 2.59 SVM RNA-class probability: 0.995600 Prediction: RNA ###################################################################### >hg17.chr18/29015061-29015181 AAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUGCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUAUGGCC ......(((((((((((........((((.((........)).)))).....)))))))))))..............(((((.........(((((((.....).))))))..))))).. ( -20.62) >mm5.chr18/22403134-22403253 AAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACAGCC ..(((((((((((((((........((((.((.......)).)))).....)))))))))..........))))))........................(((((.(....)))))).. ( -19.42) >rn3.chr18/13670933-13671052 AAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCAUAAACAAUAAAGAACUUCAUCCCGUAAGUUUGCUACAACC ..(((((((((((((((........((((.((.......)).)))).....)))))))))..........))))))..............(((((((.....).))))))......... ( -18.52) >canFam1.chr7/23795551-23795432 AAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCC ......(((((((((((........((((.((.......)).)))).....)))))))))))............................(((((((.....).))))))((....)). ( -20.92) >galGal2.chr2/105995129-105995248 AAUUUUUGUUCAUGCCUGCUUACUGAUUUUUGUUCAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCC ......(((((((((((........((((.((.......)).)))).....)))))))))))............................(((((((.....).))))))((....)). ( -21.02) >consensus AAUUUCUGUUCAUGCCUGCUUACUGAUUUUUGUU_CAUUUCACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCC ......(((((((((((........((((.((........)).)))).....)))))))))))............................(((((((.....).))))))......... (-18.28 = -18.28 + -0.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
