Structure #89860
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Strand | + |
| Position | 29,015,101 - 29,015,221 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 97.67 |
| Columns | 120 |
| Mean single MFE | -22.12 |
| Consensus MFE | -21 |
| Combinations/base pair | 31 / 30 = 1.03 |
| SCI | 0.95 |
| z-score | -1.97 |
| RNA class probability | 0.996399 |
This structure is part of cluster 47135
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 97.67 Mean single sequence MFE: -22.12 Consensus MFE: -21.00 Energy contribution: -20.84 Covariance contribution: -0.16 Mean z-score: -1.97 Structure conservation index: 0.95 SVM decision value: 2.69 SVM RNA-class probability: 0.996399 Prediction: RNA ###################################################################### >hg17.chr18/29015101-29015221 CACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUAUGGCCAGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .............((((.((.....(((..((((((((.............(((((((.....).))))))(((......))).)))))))).))).)))))).((((((....)))))) ( -22.10) >mm5.chr18/22403173-22403293 CACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACAGCCAGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .............(((((((.....)))...(((...((((((((......(((((((.....).))))))(((......))).)))))))))))....)))).((((((....)))))) ( -22.10) >rn3.chr18/13670972-13671092 CACAAAUAAACAAGGCAUGAAUACAUCAACCCAGAAACCAUAAACAAUAAAGAACUUCAUCCCGUAAGUUUGCUACAACCAGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .............(((((((.....)))...(((...((((((((......(((((((.....).))))))(((......))).)))))))))))....)))).((((((....)))))) ( -21.80) >canFam1.chr7/23795591-23795471 CACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCCAGCAGUUUAUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .(((((((.....((..(((.....)))..)).....((((((((......(((((((.....).))))))((....)).....))))))))..........)))))))........... ( -21.70) >galGal2.chr2/105995168-105995288 CACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCCAGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .............((((.((.....(((..((((((((.............(((((((.....).))))))((....)).....)))))))).))).)))))).((((((....)))))) ( -22.90) >consensus CACAAAUAAACAAGGCAUGAAUACAUCAACCCACAAACCAUAAACAAUAAAGAACUUCAUCCUGUAAGUUUGCUACGGCCAGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAA .(((((((.....((..(((.....)))..)).....((((((((......(((((((.....).))))))(((......))).))))))))..........)))))))........... (-21.00 = -20.84 + -0.16)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
