Structure #89865
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Strand | + |
| Position | 29,015,181 - 29,015,301 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 92.92 |
| Columns | 120 |
| Mean single MFE | -32.06 |
| Consensus MFE | -26.76 |
| Combinations/base pair | 33 / 29 = 1.14 |
| SCI | 0.83 |
| z-score | -2.16 |
| RNA class probability | 0.987394 |
This structure is part of cluster 47135
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 92.92 Mean single sequence MFE: -32.06 Consensus MFE: -26.76 Energy contribution: -25.96 Covariance contribution: -0.80 Mean z-score: -2.16 Structure conservation index: 0.83 SVM decision value: 2.08 SVM RNA-class probability: 0.987394 Prediction: RNA ###################################################################### >hg17.chr18/29015181-29015301 AGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACUGAAUACACAAGAGGAGUGCUCAGCUGUGAACCACUCAAAUGCAGACAACAGUAA .((((((..(((((((..((.(((((((((....))))))).....((((((........))))))...........)).))...)))))))..)))........)))............ ( -28.40) >mm5.chr18/22403253-22403373 AGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACCGAAUACACAGGAGAAGUGCUCAGCCAUGAACUAGUCAGAGGCAGGCAACAGGAA .((((((..(((((((.(((.((.((((((((.......))))))))(((((........))))).........)).))).....)))))))..)))).((.....))..))........ ( -33.90) >rn3.chr18/13671052-13671172 AGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACUGAAUACACAGGAGAAGUGCUCAGCCAUGAACUAGGCAGAGGCAGGCAACAGGAA .((((((..(((((((....((.((((.((....((((((((...((....))..)))))))).(((......))))).)))))))))))))..))))..((....))..))........ ( -36.70) >canFam1.chr7/23795671-23795551 AGCAGUUUAUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACUGAAUACACAAGAGGAGUGCUCAGCUGUGAACCACUCAAAUGCAGACAACAGUAA .(((((((((((((((..((.(((((((((....))))))).....((((((........))))))...........)).))...))))))))))))........)))............ ( -29.60) >galGal2.chr2/105995248-105995368 AGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACUGAAUACACAAGAGAAGUGUUCAGCUGUGAAUCACACAAACGCAGACAACAGUAA ....((((((((((((((((.(((((((((....))))))).....((((((........))))))...........)).)).)))))))((((.....))))..)))))))........ ( -31.70) >consensus AGCAGUUUGUGGCUGAAUCUGCUAUUUGUCAUAAGAUAAAUGAUAAAGUGAUUGCCAUUUGUCACUGAAUACACAAGAGAAGUGCUCAGCUGUGAACCACUCAAAGGCAGACAACAGUAA ....((((((((((((..((.((.((((((((.......))))))))(((((........)))))............)).))...))))))))))))....................... (-26.76 = -25.96 + -0.80)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
