Structure #89867

Summary

Genome/Assembly hg17
Chromosome/Contig chr18
Strand -
Position 29,015,181 - 29,015,301
Number of sequences 5
Organisms human, mouse, rat, dog, chicken
Mean pairwise identity 92.92
Columns 120
Mean single MFE -28.3
Consensus MFE -22.52
Combinations/base pair 35 / 32 = 1.09
SCI 0.8
z-score -1.93
RNA class probability 0.896913

This structure is part of cluster 47135

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  92.92
 Mean single sequence MFE: -28.30
 Consensus MFE: -22.52
 Energy contribution: -23.32
 Covariance contribution:   0.80
 Mean z-score:  -1.93
 Structure conservation index:   0.80
 SVM decision value:   0.99
 SVM RNA-class probability: 0.896913
 Prediction: RNA

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>hg17.chr18/29015301-29015181
UUACUGUUGUCUGCAUUUGAGUGGUUCACAGCUGAGCACUCCUCUUGUGUAUUCAGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCACAAACUGCU
...(((..((((((((((((((((((..(((((((((((.......))))..)))))......))..)))))))...((((.......))))))))).)))))).)))............ ( -29.60)
>mm5.chr18/22403373-22403253
UUCCUGUUGCCUGCCUCUGACUAGUUCAUGGCUGAGCACUUCUCCUGUGUAUUCGGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCACAAACUGCU
....(((.((.((..((((.(((..((((((((((((((.......))))..)))))((.(((((..((.....))..))))).)).)))))....)))))))..)))).)))....... ( -26.60)
>rn3.chr18/13671172-13671052
UUCCUGUUGCCUGCCUCUGCCUAGUUCAUGGCUGAGCACUUCUCCUGUGUAUUCAGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCACAAACUGCU
....(((.((.((..(((((.((..((((((((((((((.......))))..)))))((.(((((..((.....))..))))).)).)))))....)))))))..)))).)))....... ( -27.30)
>canFam1.chr7/23795551-23795671
UUACUGUUGUCUGCAUUUGAGUGGUUCACAGCUGAGCACUCCUCUUGUGUAUUCAGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCAUAAACUGCU
...(((..((((((((((((((((((..(((((((((((.......))))..)))))......))..)))))))...((((.......))))))))).)))))).)))............ ( -29.60)
>galGal2.chr2/105995368-105995248
UUACUGUUGUCUGCGUUUGUGUGAUUCACAGCUGAACACUUCUCUUGUGUAUUCAGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCACAAACUGCU
...(((..((((((((((((((((......(((((((((.......))))..)))))((.(((((..((.....))..))))).)))))).)))))).)))))).)))............ ( -28.40)
>consensus
UUACUGUUGUCUGCAUUUGAGUGGUUCACAGCUGAGCACUUCUCUUGUGUAUUCAGUGACAAAUGGCAAUCACUUUAUCAUUUAUCUUAUGACAAAUAGCAGAUUCAGCCACAAACUGCU
...(((..(((((((((((...........(((((((((.......))))..)))))((.(((((..((.....))..))))).))......))))).)))))).)))............ (-22.52 = -23.32 +   0.80) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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