Structure #93503

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	7,849,556 - 7,849,668
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.98
Columns	120
Mean single MFE	-33.7
Consensus MFE	-20.89
Combinations/base pair	24 / 20 = 1.20
SCI	0.62
z-score	-1.79
RNA class probability	0.567065
Warning	Base composition out of range

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.98
 Mean single sequence MFE: -33.70
 Consensus MFE: -20.89
 Energy contribution: -21.14
 Covariance contribution:   0.25
 Mean z-score:  -1.79
 Structure conservation index:   0.62
 SVM decision value:   0.07
 SVM RNA-class probability: 0.567065
 Prediction: RNA

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>hg17.chr19/7849556-7849668
ACAACAAGAAAAGCACCCAAAAACCACAUGGAGACAGAAGAUGAGACACAACUCCUCCCCCACCCCUUCCCUGCUCUAGAGUGGGGACAAAGUCAGAGUGAGACAGCUUGGG
....((((.....(((.(.....((....)).(((....((.(((......))).))..........((((..((....))..))))....))).).)))......)))).. ( -26.00)
>canFam1.chr??/36-146
ACAACAAGAAAAACACCCAAAACCACAUGGAGACAGAAGACGAGACACAACUCCUCCCCCACCUCCCCCCUGGCCCUAGAGUGGGGACGUUGGGGGGCGGGACAGCUGGG
...............((((........((....))...............(((((((((.((.(((((((((....))).).))))).)).)))))).))).....)))) ( -35.60)
>mm5.chr4/134426281-134426398
AAAACGAGAAAAACACCCAAAACCACAUGAAGACAGAAGACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAGUGGGGGUGAGACAGCAGGGAGUUGGG
...............(((((..((...((....))...............(((..(((((((..(((((((.......))))))).....))))))).)))......))...))))) ( -37.90)
>rn3.chr??/40-158
AAAACAAGAAAAACACCCAAAACCACAUGAAGACAGAAGACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAAUGGGGGGUGAGACAGCAGGGAAUUGGG
...............(((((..((...((....))...............(((.(((((((...(((((((.......)))))))......))))))).)))......))...))))) ( -35.30)
>consensus
AAAACAAGAAAAACACCC_AAAACCACAUGAAGACAGAAGACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCC_AAAGGGGGGACAUAGU_GGGGGUGAGACAGC______UUGGG
...............(((..........((....))...............((((((((......(((((((........)))))))........))))).))).............))) (-20.89 = -21.14 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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