Structure #93509

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	7,849,596 - 7,849,707
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.5
Columns	120
Mean single MFE	-47.95
Consensus MFE	-28.15
Combinations/base pair	32 / 28 = 1.14
SCI	0.59
z-score	-2.06
RNA class probability	0.676441

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.50
 Mean single sequence MFE: -47.95
 Consensus MFE: -28.15
 Energy contribution: -28.78
 Covariance contribution:   0.63
 Mean z-score:  -2.06
 Structure conservation index:   0.59
 SVM decision value:   0.30
 SVM RNA-class probability: 0.676441
 Prediction: RNA

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>hg17.chr19/7849596-7849707
AUGAGACACAACUCCUCCCCCACCCCUUCCCUGCUCUAGAGUGGGGACAAAGUCAGAGUGAGACAGCUUGGGGGAGACCUGAACCUCAGUCCAGCCCUACAGGCUCCAGGC
..(((......)))((((((((.....((((..((....))..))))....(((.......)))....)))))))).((((.((....))..((((.....)))).)))). ( -38.00)
>canFam1.chr??/75-186
ACGAGACACAACUCCUCCCCCACCUCCCCCCUGGCCCUAGAGUGGGGACGUUGGGGGGCGGGACAGCUGGGGGAGACCUUGAGCCUCAGUCCAGCCCAGCAGGCUCCAGGC
..(((......)))(((((((((((((((((...((((.....)))).....)))))).))).....)))))))).(((.((((((..((........)))))))).))). ( -52.00)
>mm5.chr4/134426320-134426438
ACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAGUGGGGGUGAGACAGCAGGGAGUUGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGC
...........(((..(((((((..(((((((.......))))))).....))))))).)))...((..(((((..(.(((((..(((.....)))....))))).)..)))))..)) ( -53.30)
>rn3.chr??/79-196
ACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCCUAAGGGGGGACAUAAUGGGGGGUGAGACAGCAGGGAAUUGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGC
...........(((.(((((((...(((((((.......)))))))......))))))).)))...((((((.(((((((.........)))))))....))))))........... ( -48.50)
>consensus
ACAAGACACAACUCCUCCCCCACCACCUCCCUGGCCC_AAAGGGGGGACAUAGU_GGGGGUGAGACAGC______UUGGGGGAGACCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGC
........(((...((((((((...(((((((........))))))).(((........)))..............))))))))...)))..(((......((((.....))))..))). (-28.15 = -28.78 +   0.63)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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