Structure #93511

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	7,849,635 - 7,849,746
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.43
Columns	120
Mean single MFE	-50.28
Consensus MFE	-33.56
Combinations/base pair	39 / 35 = 1.11
SCI	0.67
z-score	-1.93
RNA class probability	0.845346

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.43
 Mean single sequence MFE: -50.28
 Consensus MFE: -33.56
 Energy contribution: -35.88
 Covariance contribution:   2.31
 Mean z-score:  -1.93
 Structure conservation index:   0.67
 SVM decision value:   0.77
 SVM RNA-class probability: 0.845346
 Prediction: RNA

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>hg17.chr19/7849635-7849746
AGUGGGGACAAAGUCAGAGUGAGACAGCUUGGGGGAGACCUGAACCUCAGUCCAGCCCUACAGGCUCCAGGCCUGCAGGGAAGGAGGGUAAUGGGGAGGCAGGGCCCAGCC
..((((..(...(((.......))).((((.(((....)))...(((((.(((..((((.(((((.....))))).))))..)))......))))))))).)..))))... ( -44.90)
>canFam1.chr??/115-226
AGUGGGGACGUUGGGGGGCGGGACAGCUGGGGGAGACCUUGAGCCUCAGUCCAGCCCAGCAGGCUCCAGGCCUGUGGGGAGCUGGGGGGGAGGGGGAGGCAGGGCCCACCC
...(....)...(((((((.........((((....))))..(((((..(((..((((((...(((((......))))).))))))..)))....)))))...)))).))) ( -53.40)
>mm5.chr4/134426359-134426474
AGGGGGGACAUAGUGGGGGUGAGACAGCAGGGAGUUGGGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGAAGGGCCAUGGGGAGGCAGGGUCCAGCC
.((..((((...((.((..((((....(((((.(((.....))))))))...))))..)).))(((((...((((((((((........))))).)))))..)))))))))..)) ( -51.60)
>rn3.chr??/118-232
AGGGGGGACAUAAUGGGGGGUGAGACAGCAGGGAAUUGGGGGCCCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGAAAGGGCCAUGGGGAGGCAGGGCCCAGCC
.(((....)....(((((..((((....(((((..........)))))...))))..)).(((((((...((((((((((........))))).)))))..)))))))))).)) ( -51.20)
>consensus
AGGGGGGACAUAGU_GGGGGUGAGACAGC______UUGGGGGAGACCUUGAACCUCAAUCCAGCCCUGCAGGCUCCAGGCCUGCAAGGA____AGGGCCAUGGGGAGGCAGGGCCCAGCC
...((((((......((((((......))......((((((....)))))).)))).)))).(((((((...((((((((((............))))).)))))..))))))))).... (-33.56 = -35.88 +   2.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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