Structure #93512

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	-
Position	7,849,635 - 7,849,746
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	79.43
Columns	120
Mean single MFE	-41.88
Consensus MFE	-29.9
Combinations/base pair	32 / 27 = 1.19
SCI	0.71
z-score	-1.95
RNA class probability	0.900524

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.43
 Mean single sequence MFE: -41.88
 Consensus MFE: -29.90
 Energy contribution: -31.27
 Covariance contribution:   1.37
 Mean z-score:  -1.95
 Structure conservation index:   0.71
 SVM decision value:   1.01
 SVM RNA-class probability: 0.900524
 Prediction: RNA

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>hg17.chr19/7849746-7849635
GGCUGGGCCCUGCCUCCCCAUUACCCUCCUUCCCUGCAGGCCUGGAGCCUGUAGGGCUGGACUGAGGUUCAGGUCUCCCCCAAGCUGUCUCACUCUGACUUUGUCCCCACU
(((((((.((((((((..........(((..((((((((((.....))))))))))..)))..))))..)))).....))).))))(((.......)))............ ( -40.60)
>canFam1.chr??/226-115
GGGUGGGCCCUGCCUCCCCCUCCCCCCCAGCUCCCCACAGGCCUGGAGCCUGCUGGGCUGGACUGAGGCUCAAGGUCUCCCCCAGCUGUCCCGCCCCCCAACGUCCCCACU
(((.((((...(((((....(((..((((((.......((((.....))))))))))..)))..)))))....((......)).........)))))))............ ( -41.61)
>mm5.chr4/134426474-134426359
GGCUGGACCCUGCCUCCCCAUGGCCCUUCCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCCCCCCCAACUCCCUGCUGUCUCACCCCCACUAUGUCCCCCCU
((..((((...(((.......)))((..((((((((((.....))))))))))..))..(((((....((((...........))))....)))))..........))))..)). ( -41.10)
>rn3.chr??/232-118
GGCUGGGCCCUGCCUCCCCAUGGCCCUUUCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCCCCCAAUUCCCUGCUGUCUCACCCCCCAUUAUGUCCCCCCU
((..((((((((((((....(((((((.....((((((.....)))))))))))))....)))))...)))))))))..................................... ( -44.20)
>consensus
GGCUGGGCCCUGCCUCCCCAUGGCCCU____UCCCUGCAGGCCUGGAGCCUGCAGGGCUGGACUGAGGUUCAAGGGCUCCCCCAA______GCUGUCUCACCCCC_ACUAUGUCCCCACU
((..((((((((((((.(((............((((((((((.....)))))))))).)))...)))))...)))))))..))..................................... (-29.90 = -31.27 +   1.37)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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