Structure #93516

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	-
Position	7,849,668 - 7,849,786
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	77.62
Columns	120
Mean single MFE	-61.2
Consensus MFE	-42.88
Combinations/base pair	46 / 37 = 1.24
SCI	0.7
z-score	-4.06
RNA class probability	0.99995

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.62
 Mean single sequence MFE: -61.20
 Consensus MFE: -42.88
 Energy contribution: -45.25
 Covariance contribution:   2.38
 Mean z-score:  -4.06
 Structure conservation index:   0.70
 SVM decision value:   4.79
 SVM RNA-class probability: 0.999950
 Prediction: RNA

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>hg17.chr19/7849786-7849668
UUGAGGGGGGCCUUCCCUCAGCUGUUUCCCCAAACUGGGGGGCUGGGCCCUGCCUCCCCAUUACCCUCCUUCCCUGCAGGCCUGGAGCCUGUAGGGCUGGACUGAGGUUCAGGUCUCC
.....((((((((..((((((..............((((((((.(....).))).)))))......(((..((((((((((.....))))))))))..)))))))))...)))))))) ( -60.90)
>canFam1.chr??/261-146
UCCAGGGGGGCCUUCCCUCAGCCUCUCCAACGUGGGGGUGGGCCCUGCCUCCCCCUCCCCCCCAGCUCCCCACAGGCCUGGAGCCUGCUGGGCUGGACUGAGGCUCAAGGUCUCC
.....(((((((((.((((((..........(.(((((.((((...))))))))).)....(((((((....(((((.....)))))..))))))).))))))...))))))))) ( -56.70)
>mm5.chr4/134426506-134426398
UCGGGGCCUCCCCUCAGCCCCUCCCCGAGAGGGGCUGGACCCUGCCUCCCCAUGGCCCUUCCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCCCC
..(((((((.....(((((((((.....)))))))))((.((((((.......)))((..((((((((((.....))))))))))..))....))).))..))))))) ( -63.30)
>rn3.chr??/266-158
UCAGGGGCCUCCCCUCAGCCCCUCCCCACAGAGGGGCUGGGCCCUGCCUCCCCAUGGCCCUUUCUUGCAGGCCUGGAGCCUGCAGGGCUGGAUUGAGGUUCAAGGGCC
..(((((...)))))(((((((((......)))))))))(((((((((((....(((((((.....((((((.....)))))))))))))....)))))...)))))) ( -63.90)
>consensus
UCG___GGGGCCUCCCCUCAGCCCCUCCCC___AC_GAGGGGCUGGGCCCUGCCUCCCCAUGGCCCU____UCCCUGCAGGCCUGGAGCCUGCAGGGCUGGACUGAGGUUCAAGGGCUCC
....(((((((.....(((((((((((.........)))))))))))....)))))))....((((......((((((((((.....)))))))))).(((((....))))).))))... (-42.88 = -45.25 +   2.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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