Structure #93519

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	7,849,707 - 7,849,826
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	71.39
Columns	120
Mean single MFE	-60.13
Consensus MFE	-32.79
Combinations/base pair	38 / 34 = 1.12
SCI	0.55
z-score	-2.96
RNA class probability	0.999642

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  71.39
 Mean single sequence MFE: -60.13
 Consensus MFE: -32.79
 Energy contribution: -35.80
 Covariance contribution:   3.00
 Mean z-score:  -2.96
 Structure conservation index:   0.55
 SVM decision value:   3.82
 SVM RNA-class probability: 0.999642
 Prediction: RNA

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>hg17.chr19/7849707-7849826
CUGCAGGGAAGGAGGGUAAUGGGGAGGCAGGGCCCAGCCCCCCAGUUUGGGGAAACAGCUGAGGGAAGGCCCCCCUCAAAAGGCUCCACCUCCUCACCAGCACUCCUGCCCAGGGACAG
((((.(((.(((((.((..((((((((..(((((.....((((.....)))).......((((((.......))))))...)))))..))))))))...)).))))).)))...).))) ( -55.20)
>canFam1.chr??/186-299
CUGUGGGGAGCUGGGGGGGAGGGGGAGGCAGGGCCCACCCCCACGUUGGAGAGGCUGAGGGAAGGCCCCCCUGGAAGGACUGCCCCCUCCCCAACACCCCUGCCGAGGGACAG
..(..(((.(.((..((((((((((((...(((((..(((.((.(((.....))))).)))..))))).((.....)).)).))))))))))..))))))..).......... ( -57.60)
>mm5.chr4/134426438-134426546
CUGCAAGGAAGGGCCAUGGGGAGGCAGGGUCCAGCCCCUCUCGGGGAGGGGCUGAGGGGAGGCCCCGAGGGACUCUACCUCCUCACUGGCCAGCCUGUCCUGGAGCAG
((((.((((..(((((((((((((.(((((((((((((((.....))))))))..((((...))))...))))))).)))))))).)))))......))))...)))) ( -68.80)
>rn3.chr??/196-306
CUGCAAGAAAGGGCCAUGGGGAGGCAGGGCCCAGCCCCUCUGUGGGGAGGGGCUGAGGGGAGGCCCCUGAGGGACUCUACCUCCUCACUGACCAGCCUGCCCAGCAGCAG
((((......((((((((((((((.((((((((((((((((....))))))))).(((((...)))))..))).)))).)))))))).))....)))).....))))... ( -58.90)
>consensus
CUGCAAGGA____AGGGCCAUGGGGAGGCAGGGCCCAGCCCCUC_GU___GGGGAGGGGCUGAGGGAAGGCCCC___CGAAGGACUCUACCUCCUCACCAACAAGCCUGCCCAGGAACAG
((((..........((((..((((((((.(((((((((((((((.........))))))))).(((....))).........)))))).)))))))).......))))........)))) (-32.79 = -35.80 +   3.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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