Structure #93520

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	-
Position	7,849,707 - 7,849,826
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	71.39
Columns	120
Mean single MFE	-60.48
Consensus MFE	-43.25
Combinations/base pair	61 / 42 = 1.45
SCI	0.72
z-score	-3.37
RNA class probability	0.999989

This structure is part of cluster 49158

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  71.39
 Mean single sequence MFE: -60.47
 Consensus MFE: -43.25
 Energy contribution: -45.00
 Covariance contribution:   1.75
 Mean z-score:  -3.37
 Structure conservation index:   0.72
 SVM decision value:   5.54
 SVM RNA-class probability: 0.999989
 Prediction: RNA

######################################################################

>hg17.chr19/7849826-7849707
CUGUCCCUGGGCAGGAGUGCUGGUGAGGAGGUGGAGCCUUUUGAGGGGGGCCUUCCCUCAGCUGUUUCCCCAAACUGGGGGGCUGGGCCCUGCCUCCCCAUUACCCUCCUUCCCUGCAG
((((....(((.(((((.(.(((((.(((((..(.((((.((((((((.....))))))))..((..(((......)))..)).)))).)..))))).))))).)))))).))).)))) ( -60.20)
>canFam1.chr??/299-186
CUGUCCCUCGGCAGGGGUGUUGGGGAGGGGGCAGUCCUUCCAGGGGGGCCUUCCCUCAGCCUCUCCAACGUGGGGGUGGGCCCUGCCUCCCCCUCCCCCCCAGCUCCCCACAG
.((((....))))((((.(((((((((((((.((.((.....))(((((((.((((((............)))))).)))))))..))))))))))))...))).)))).... ( -61.50)
>mm5.chr4/134426546-134426438
CUGCUCCAGGACAGGCUGGCCAGUGAGGAGGUAGAGUCCCUCGGGGCCUCCCCUCAGCCCCUCCCCGAGAGGGGCUGGACCCUGCCUCCCCAUGGCCCUUCCUUGCAG
((((...((((.(((...((((.((.((((((((.((((...((((...))))..((((((((.....)))))))))))).)))))))).))))))))))))).)))) ( -61.90)
>rn3.chr??/306-196
CUGCUGCUGGGCAGGCUGGUCAGUGAGGAGGUAGAGUCCCUCAGGGGCCUCCCCUCAGCCCCUCCCCACAGAGGGGCUGGGCCCUGCCUCCCCAUGGCCCUUUCUUGCAG
...((((.(((.(((..(((((.((.((((((((.((((...(((((...))))).((((((((......)))))))))))).)))))))).))))))))))))).)))) ( -58.30)
>consensus
CUGCCCCUGGGCAGGCGGGCCAGUGAGGAGGUAGAGUCCCUCG___GGGGCCUCCCCUCAGCCCCUCCCC___AC_GAGGGGCUGGGCCCUGCCUCCCCAUGGCCCU____UCCCUGCAG
((((....(((...((((((((.((.((((((((.((((......(((((....)))))((((((((.........)))))))))))).)))))))).))))))))))...)))..)))) (-43.25 = -45.00 +   1.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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