Structure #95328

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	43,571,641 - 43,571,761
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	95
Columns	120
Mean single MFE	-48.55
Consensus MFE	-49.64
Combinations/base pair	46 / 40 = 1.15
SCI	1.02
z-score	-1.65
RNA class probability	0.883486

This structure is part of cluster 50107

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  95.00
 Mean single sequence MFE: -48.55
 Consensus MFE: -49.64
 Energy contribution: -48.58
 Covariance contribution:  -1.06
 Mean z-score:  -1.65
 Structure conservation index:   1.02
 SVM decision value:   0.93
 SVM RNA-class probability: 0.883485
 Prediction: RNA

######################################################################

>hg17.chr19/43571641-43571761
UCUCAUUCCCUGCUUCACCUGUUGUCGGGGGAGGCGGGCGGACAAAGGAAGCAGCGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCAGC
(((..(((((((((((.((((....)))).)))))))).)))....))).((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))... ( -51.40)
>canFam1.chr1/8096039-8095919
CCUCUUUCUCUGCUUCACCUGUUGUCGGGGGAGGCGGGCGGACAAAGGAAGCAGCAUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGAC
(((..(((((((((((.((((....)))).)))))))).)))...)))..(((((.....((((........))))....(((((((((.((.....)).)))).)))))..)))))... ( -45.40)
>mm5.chr7/114908730-114908610
CCUCUUUCCCCGCUUCACCUGUUGUUGGGGGAGGCGGGCGGACAAAGGAAGCAGUGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGC
(((..(((((((((((.(((......))).)))))))).)))...)))..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))... ( -49.80)
>rn3.chr1/183740732-183740612
CCUCUUUCCCUGCUUCACCUGUUGUUGGGGGAGGCGGGCGGACAAAGGAAGCAGUGUCACGUGACUACUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGC
(((..(((((((((((.(((......))).)))))))).)))...)))..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))... ( -47.60)
>consensus
CCUCUUUCCCUGCUUCACCUGUUGUCGGGGGAGGCGGGCGGACAAAGGAAGCAGCGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGGC
(((..(((((((((((.((((....)))).)))))))).)))...)))..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))... (-49.64 = -48.58 +  -1.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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