Structure #95333

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	43,571,681 - 43,571,801
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	92.92
Columns	120
Mean single MFE	-45.55
Consensus MFE	-41.55
Combinations/base pair	34 / 32 = 1.06
SCI	0.91
z-score	-1.68
RNA class probability	0.841586

This structure is part of cluster 50107

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  92.92
 Mean single sequence MFE: -45.55
 Consensus MFE: -41.55
 Energy contribution: -41.55
 Covariance contribution:   0.00
 Mean z-score:  -1.68
 Structure conservation index:   0.91
 SVM decision value:   0.75
 SVM RNA-class probability: 0.841586
 Prediction: RNA

######################################################################

>hg17.chr19/43571681-43571801
GACAAAGGAAGCAGCGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCAGCCGCCCCUUCCCCUCCUGAAGGGCCCGGGAAACCCAGCAGC
......((..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))..))((((((((.......))))))...((....))..))... ( -47.60)
>canFam1.chr1/8096079-8095959
GACAAAGGAAGCAGCAUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGACCGCCCCUUCCCCUCCCGAUGGGCCGGGGAAAACCGGCAGC
......((.((((((((...))).)))))...........((((..(((((((.((...(((((..(((((((.......)))))))))))))).)))))))...))))...))...... ( -48.20)
>mm5.chr7/114908770-114908650
GACAAAGGAAGCAGUGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGCCGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUC
......((..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))..))(((..(((.......))).)))((((....))))..... ( -43.20)
>rn3.chr1/183740772-183740652
GACAAAGGAAGCAGUGUCACGUGACUACUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGCCGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUC
......((..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))..))(((..(((.......))).)))((((....))))..... ( -43.20)
>consensus
GACAAAGGAAGCAGCGUCACGUGACUGCUCAUUCACAAAAUCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGGCCGCCCCUUCCCCUCCUGAACGGCCGGGGAAACCCGACAGC
......((..((((((((..((((........)))).....((((((((.((.....)).)))).))))))))))))..)).....((((((.((.....))..)))))).......... (-41.55 = -41.55 +   0.00) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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