Structure #95338

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	43,571,721 - 43,571,837
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	90.38
Columns	120
Mean single MFE	-64.27
Consensus MFE	-54.69
Combinations/base pair	43 / 39 = 1.10
SCI	0.85
z-score	-2.9
RNA class probability	0.98788

This structure is part of cluster 50107

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.38
 Mean single sequence MFE: -64.27
 Consensus MFE: -54.69
 Energy contribution: -56.38
 Covariance contribution:   1.69
 Mean z-score:  -2.90
 Structure conservation index:   0.85
 SVM decision value:   2.10
 SVM RNA-class probability: 0.987880
 Prediction: RNA

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>hg17.chr19/43571721-43571837
UCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCAGCCGCCCCUUCCCCUCCUGAAGGGCCCGGGAAACCCAGCAGCCUGCAGGUGGGGGAGGGGGCUAGAGCUCGUCCGGGU
.(((..(((.((....)).)))((.(((((((......)))((((((((((((((((.(((((..((....))..))..))).)))).)))))))))))).....)))).))))). ( -63.00)
>canFam1.chr1/8096119-8095999
UCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGACCGCCCCUUCCCCUCCCGAUGGGCCGGGGAAAACCGGCAGCCUGCAGGUGGGGGGAAGGGGCUAGAGCUCGUUGCCUGGGU
.((((.(((.((....)).)))(((.(.((((.(((.....(((((((((((((((...(((((((......)))))..))....)).)))))))))))))))).)))).).))))))). ( -66.10)
>mm5.chr7/114908809-114908690
UCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGCCGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUCCUGCAGGUGGGGGAGGGGGCUAGAACUCGUUGCCUGGGC
.((((.(((.((....)).)))((((((((((......)))((((((((((((((((...((.((((....))))....))..)))).)))))))))))).....))))..))))))). ( -62.80)
>rn3.chr1/183740811-183740692
UCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGUGGCCGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUCCUGCAGGUGGGGGAGGGGGCUAGAACUCCUUGCCUGGGU
.((((.(((.((....)).)))(((.((((((......)))((((((((((((((((...((.((((....))))....))..)))).)))))))))))).......))).))))))). ( -65.20)
>consensus
UCCCAUCCCAUUGAGAAAAGGGGGCUGGGGGCGCUGCGGCCGCCCCUUCCCCUCCUGAACGGCCGGGGAAACCCGACAGCCUGCAGGUG_GGGGAGGGGGCUAGAACUCGUUGCCUGGGU
.((((((((.((.....)).)))).))))(((......)))(((((((((((.((((....((((((....))))))......))))...)))))))))))....(((((.....))))) (-54.69 = -56.38 +   1.69)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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