Structure #95341

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	-
Position	43,571,721 - 43,571,837
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	90.38
Columns	120
Mean single MFE	-54.62
Consensus MFE	-48.71
Combinations/base pair	38 / 34 = 1.12
SCI	0.89
z-score	-1.8
RNA class probability	0.89142

This structure is part of cluster 50107

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  90.38
 Mean single sequence MFE: -54.62
 Consensus MFE: -48.71
 Energy contribution: -49.15
 Covariance contribution:   0.44
 Mean z-score:  -1.80
 Structure conservation index:   0.89
 SVM decision value:   0.97
 SVM RNA-class probability: 0.891420
 Prediction: RNA

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>hg17.chr19/43571837-43571721
ACCCGGACGAGCUCUAGCCCCCUCCCCCACCUGCAGGCUGCUGGGUUUCCCGGGCCCUUCAGGAGGGGAAGGGGCGGCUGCAGCGCCCCCAGCCCCCUUUUCUCAAUGGGAUGGGA
....((....(((.(((((((((.((((.((((.(((..(((.((....)).)))))).)))).))))..)))).))))).))).))((((...(((..........))).)))). ( -55.60)
>canFam1.chr1/8095999-8096119
ACCCAGGCAACGAGCUCUAGCCCCUUCCCCCCACCUGCAGGCUGCCGGUUUUCCCCGGCCCAUCGGGAGGGGAAGGGGCGGUCGCAGCGCCCCCAGCCCCCUUUUCUCAAUGGGAUGGGA
.(((((((...........(((((((((((...((((..((..(((((......)))))))..)))).)))))))))))((..((...))..)).)))(((..........))).)))). ( -58.80)
>mm5.chr7/114908690-114908809
GCCCAGGCAACGAGUUCUAGCCCCCUCCCCCACCUGCAGGAUGUCGGGUUUCCCCAGCCGUUCAGGAGGGGAAGGGGCGGCCACAGCGCCCCCAGCCCCCUUUUCUCAAUGGGAUGGGA
.(((((((...........(((((.(((((..((((..((.....(((....)))..))...)))).))))).)))))(((......)))....)))(((..........))).)))). ( -51.10)
>rn3.chr1/183740692-183740811
ACCCAGGCAAGGAGUUCUAGCCCCCUCCCCCACCUGCAGGAUGUCGGGUUUCCCCAGCCGUUCAGGAGGGGAAGGGGCGGCCACAGCGCCCCCAGCCCCCUUUUCUCAAUGGGAUGGGA
.(((((((..((.......(((((.(((((..((((..((.....(((....)))..))...)))).))))).)))))(((......)))))..)))(((..........))).)))). ( -53.00)
>consensus
ACCCAGGCAACGAGCUCUAGCCCCCUCCCC_CACCUGCAGGAUGCCGGGUUUCCCCAGCCCUUCAGGAGGGGAAGGGGCGGCCACAGCGCCCCCAGCCCCCUUUUCUCAAUGGGAUGGGA
.(((((((...........(((((.(((((...((((..(((((..((.....)))))))...)))).))))).)))))(((......)))....)))(((..........))).)))). (-48.71 = -49.15 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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