Structure #95344

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	+
Position	43,571,761 - 43,571,877
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.15
Columns	120
Mean single MFE	-64.6
Consensus MFE	-47.46
Combinations/base pair	53 / 39 = 1.36
SCI	0.73
z-score	-3.79
RNA class probability	0.999124

This structure is part of cluster 50107

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.15
 Mean single sequence MFE: -64.60
 Consensus MFE: -47.46
 Energy contribution: -47.90
 Covariance contribution:   0.44
 Mean z-score:  -3.79
 Structure conservation index:   0.73
 SVM decision value:   3.39
 SVM RNA-class probability: 0.999124
 Prediction: RNA

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>hg17.chr19/43571761-43571877
CGCCCCUUCCCCUCCUGAAGGGCCCGGGAAACCCAGCAGCCUGCAGGUGGGGGAGGGGGCUAGAGCUCGUCCGGGUCCCUAAGGUUGGGACGCCAGGGUCCCUGUGCUGGAUGGCA
.((((((((((((((((.(((((..((....))..))..))).)))).))))))))))))....((.((((((.(((((.......)))))((((((...)))).)))))))))). ( -69.40)
>canFam1.chr1/8096159-8096039
CGCCCCUUCCCCUCCCGAUGGGCCGGGGAAAACCGGCAGCCUGCAGGUGGGGGGAAGGGGCUAGAGCUCGUUGCCUGGGUCCCUAAGGUUGAGACGCCAGGGUCCCUGCGCUAGGUGGUA
.(((((((((((((((...(((((((......)))))..))....)).)))))))))))))....((..(.(((..(((.((((..(((......))))))).))).))).)..)).... ( -64.20)
>mm5.chr7/114908848-114908730
CGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUCCUGCAGGUGGGGGAGGGGGCUAGAACUCGUUGCCUGGGCUCAUAAGGUUGGGACUUCAUGCUCCAUGAGCCUGGGACA
.((((((((((((((((...((.((((....))))....))..)))).))))))))))))..........((((..(((((((..(((...(....)..)))..)))))))..)).)) ( -63.90)
>rn3.chr1/183740851-183740732
CGCCCCUUCCCCUCCUGAACGGCUGGGGAAACCCGACAUCCUGCAGGUGGGGGAGGGGGCUAGAACUCCUUGCCUGGGUUCCUAAGGUUGGGAUUUCAGGGUUCAUAAGCCUAGGGACA
.((((((((((((((((...((.((((....))))....))..)))).)))))))))))).......((......))(((((((.((((.(((((....)))))...))))))))))). ( -60.90)
>consensus
CGCCCCUUCCCCUCCUGAACGGCCGGGGAAACCCGACAGCCUGCAGGUG_GGGGAGGGGGCUAGAACUCGUUGCCUGGGUCCCUAAGGUUGGGACGCCAGGGUCCAUGAGCCUGGUGACA
.(((((((((((.((((....((((((....))))))......))))...)))))))))))..(((((((.....)))))))......(((((.(((.(((...)))))))))))..... (-47.46 = -47.90 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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