Structure #95345
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr19 |
| Strand | - |
| Position | 43,571,761 - 43,571,877 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 82.15 |
| Columns | 120 |
| Mean single MFE | -53.38 |
| Consensus MFE | -41.05 |
| Combinations/base pair | 45 / 38 = 1.18 |
| SCI | 0.77 |
| z-score | -2.22 |
| RNA class probability | 0.956127 |
This structure is part of cluster 50107
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 82.15 Mean single sequence MFE: -53.38 Consensus MFE: -41.05 Energy contribution: -42.30 Covariance contribution: 1.25 Mean z-score: -2.22 Structure conservation index: 0.77 SVM decision value: 1.44 SVM RNA-class probability: 0.956127 Prediction: RNA ###################################################################### >hg17.chr19/43571877-43571761 UGCCAUCCAGCACAGGGACCCUGGCGUCCCAACCUUAGGGACCCGGACGAGCUCUAGCCCCCUCCCCCACCUGCAGGCUGCUGGGUUUCCCGGGCCCUUCAGGAGGGGAAGGGGCG .(((.(((.((.((((...))))))(((((.......)))))..))).).))....(((((.(((((..((((.(((..(((.((....)).)))))).)))).))))).))))). ( -59.10) >canFam1.chr1/8096039-8096159 UACCACCUAGCGCAGGGACCCUGGCGUCUCAACCUUAGGGACCCAGGCAACGAGCUCUAGCCCCUUCCCCCCACCUGCAGGCUGCCGGUUUUCCCCGGCCCAUCGGGAGGGGAAGGGGCG .......(((.((..(...(((((.(((((.......))))))))))...)..)).)))(((((((((((...((((..((..(((((......)))))))..)))).))))))))))). ( -60.70) >mm5.chr7/114908730-114908848 UGUCCCAGGCUCAUGGAGCAUGAAGUCCCAACCUUAUGAGCCCAGGCAACGAGUUCUAGCCCCCUCCCCCACCUGCAGGAUGUCGGGUUUCCCCAGCCGUUCAGGAGGGGAAGGGGCG ((.((..(((((((((..(.....)..)))......))))))..))))..........(((((.(((((..((((..((.....(((....)))..))...)))).))))).))))). ( -48.70) >rn3.chr1/183740732-183740851 UGUCCCUAGGCUUAUGAACCCUGAAAUCCCAACCUUAGGAACCCAGGCAAGGAGUUCUAGCCCCCUCCCCCACCUGCAGGAUGUCGGGUUUCCCCAGCCGUUCAGGAGGGGAAGGGGCG .((((((.((((...((((((((...(((........)))...))))......)))).)))).....((((.((((..((.....(((....)))..))...)))).)))).)))))). ( -45.00) >consensus UGCCACCAAGCUCAGGGACCCUGAAGUCCCAACCUUAGGAACCCAGGCAACGAGCUCUAGCCCCCUCCCC_CACCUGCAGGAUGCCGGGUUUCCCCAGCCCUUCAGGAGGGGAAGGGGCG ........(((((.(((.((((((.((....)).)))))).))).(....))))))...(((((.(((((...((((..(((((..((.....)))))))...)))).))))).))))). (-41.05 = -42.30 + 1.25)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
