Structure #96477

Summary

Genome/Assembly hg17
Chromosome/Contig chr19
Strand +
Position 55,092,106 - 55,092,158
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 82.35
Columns 57
Mean single MFE -17.97
Consensus MFE -14.94
Combinations/base pair 19 / 14 = 1.36
SCI 0.83
z-score -3.23
RNA class probability 0.998652

This structure is part of cluster 50608

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 57
 Columns: 57
 Strand: +
 Mean pairwise identity:  82.35
 Mean single sequence MFE: -17.97
 Consensus MFE: -14.94
 Energy contribution: -14.12
 Covariance contribution:  -0.81
 Mean z-score:  -3.23
 Structure conservation index:   0.83
 SVM decision value:   3.17
 SVM RNA-class probability: 0.998652
 Prediction: RNA

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>hg17.chr19/55092106-55092158
GGAGGAAGUUAAUCAGUCUAUUCACUUCCUUUUGCCCCAGAUAGUUCUGGGG
(((((((((.(((......))).)))))))))..(((((((....))))))) ( -21.50)
>mm5.chr7/100821925-100821872
GGAGGAAGUAACUCAGUCUAUUUUUCUUCUUCCUGCUUCAAAUAGCUUUGGGG
((((((((.................))))))))..(((((((....))))))) ( -12.33)
>rn3.chr1/172735555-172735501
GGAGGAAGUAACUUAGUCUAUUUUUUCUUCCUCCUGCUCCAAAUAGCUUUGGGG
((((((((..................))))))))..(((((((....))))))) ( -17.77)
>canFam1.chr1/15964711-15964658
GAGAGGAAGCAAAUCAGUCUAUUUUCUUCCUCUUGCCCCAAAUAGUUCUGGGG
(((((((((.((((......)))).))))))))).(((((........))))) ( -20.30)
>consensus
G_GAGGAAGUAA__AUCAGUCUA__UUUUCUUCCUCCUGCCCCAAAUAGCUCUGGGG
..(((((((....................)))))))...(((((((....))))))) (-14.94 = -14.12 +  -0.81) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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