Structure #96478

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr19
Strand	-
Position	55,092,106 - 55,092,158
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.35
Columns	57
Mean single MFE	-15.76
Consensus MFE	-10.64
Combinations/base pair	16 / 14 = 1.14
SCI	0.68
z-score	-3.17
RNA class probability	0.994931

This structure is part of cluster 50608

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 57
 Columns: 57
 Strand: +
 Mean pairwise identity:  82.35
 Mean single sequence MFE: -15.75
 Consensus MFE: -10.64
 Energy contribution: -11.45
 Covariance contribution:   0.81
 Mean z-score:  -3.17
 Structure conservation index:   0.68
 SVM decision value:   2.52
 SVM RNA-class probability: 0.994931
 Prediction: RNA

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>hg17.chr19/55092158-55092106
CCCCAGAACUAUCUGGGGCAAAAGGAAGUGAAUAGACUGAUUAACUUCCUCC
(((((((....)))))))....(((((((.(((......))).))))))).. ( -20.00)
>mm5.chr7/100821872-100821925
CCCCAAAGCUAUUUGAAGCAGGAAGAAGAAAAAUAGACUGAGUUACUUCCUCC
.......(((......)))((((((....................)))))).. (  -7.05)
>rn3.chr1/172735501-172735555
CCCCAAAGCUAUUUGGAGCAGGAGGAAGAAAAAAUAGACUAAGUUACUUCCUCC
..(((((....)))))....((((((((..................)))))))) ( -14.77)
>canFam1.chr1/15964658-15964711
CCCCAGAACUAUUUGGGGCAAGAGGAAGAAAAUAGACUGAUUUGCUUCCUCUC
(((((((....)))))))..((((((((.((((......)))).)))))))). ( -21.20)
>consensus
CCCCAAAACUAUUUGGAGCAAGAGGAAGAAAA__UAGACUGAG__UUACUUCCUC_C
(((((((....)))))))...(((((((....................))))))).. (-10.64 = -11.45 +   0.81) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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