Structure #97465

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	+
Position	11,606,252 - 11,606,367
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.03
Columns	120
Mean single MFE	-50.88
Consensus MFE	-34.74
Combinations/base pair	45 / 37 = 1.22
SCI	0.68
z-score	-1.55
RNA class probability	0.510181

This structure is part of cluster 51137

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.03
 Mean single sequence MFE: -50.88
 Consensus MFE: -34.74
 Energy contribution: -36.17
 Covariance contribution:   1.44
 Mean z-score:  -1.55
 Structure conservation index:   0.68
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.510181
 Prediction: RNA

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>hg17.chr2/11606252-11606367
GCACCAUCUGGCUGCUUCCUCUGCUGGAAGCCCUGUGAGAUGUGAGGCUCUCCCUGGGAGCCUGAGGGCGGGGGGAGGGCAGGGGCACUGACCUGGUGGCUUCAAGGUGGUCACA
.((((((((.((.((((((......))))))...)).)))).(((((((((((((....(((....)))..))))))(.((((........)))).)))))))).))))...... ( -51.30)
>mm5.chr12/98167551-98167433
GCACCAUCUGGCCCUCCCUCAGCUGGAAUCUCAGUAUGACAUGUGGCUCUCCAUGGGGGCUUGAGUACGGAGGGAGGGAAGGGCCACUGACUUGGUUGGUAGCUUCAAGGUGGCCGAA
.......((..(((((((((.(((((....)))))...((....((((((.....))))))...))...))))))))).))(((((((.....(((.....)))....)))))))... ( -47.80)
>rn3.chr6/107191661-107191547
GCACCAUCUGGCCCUCCCUCAGCUGGAAUCCCAGUAUGACAUGUGGCUCUCCAUGGGGCUUGAGUAUGGAGGGAGGGAAGGGGCCAUUGACUUGGUAGCUUCAAGGUGGCCGAA
.......((..(((((((((.(((((....)))))....((((.((((((....))))))....)))))))))))))..))((((((...(((((.....)))))))))))... ( -50.70)
>canFam1.chr17/11168129-11168245
GCACCAUCUGGCUCCCCCCUCUGCGGGAAGCCCUUUGAGACUUGAGGCUCUCCGUAGGCGCCUGCGUGUGGAGGGAGGGCAGGGGGCACUGACCUGGUGGCUUCAAGGUGGUCACU
(.(((((((.((.((.(((((..(((..(((((..........).))))..))((((....))))..)..))))).)))).((((.((((.....)))).)))).))))))))... ( -53.70)
>consensus
GCACCAUCUGGCC_CUCCCUCAGCUGGAAGCCCAGUAAGACAUGAGGCUCUCCAUGGG_GCCUGAGUACGGAGGGAGGGAAGGGG_CACUGAC____CUGGUAGCUUCAAGGUGGCCAAA
...((((((.(((.(((((((.(((((....))))).........((((((.....))))))........)))))))))).((((.((((((.....)))))).)))).))))))..... (-34.74 = -36.17 +   1.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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