Structure #97469

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	+
Position	11,606,367 - 11,606,486
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.87
Columns	120
Mean single MFE	-48.68
Consensus MFE	-32.9
Combinations/base pair	46 / 38 = 1.21
SCI	0.68
z-score	-3.64
RNA class probability	0.99923

This structure is part of cluster 51137

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.87
 Mean single sequence MFE: -48.67
 Consensus MFE: -32.90
 Energy contribution: -33.40
 Covariance contribution:   0.50
 Mean z-score:  -3.64
 Structure conservation index:   0.68
 SVM decision value:   3.45
 SVM RNA-class probability: 0.999230
 Prediction: RNA

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>hg17.chr2/11606367-11606486
ACCCCGUCCCCUCCUGUGUCUCCCAGGAGGAAUGCUGCCUAAAAGGGCAGAGCAGAUGUUCUCAGGCCAGAGUGAUCCUUCAUCAGCCCCUCCUCCGGGAACAGGAGGUGACAGCAUAU
.....(((.((((((((...((((.((((((...((((((....)))))).((.((((..(((......)))........)))).))...)))))))))))))))))).)))....... ( -50.90)
>mm5.chr12/98167669-98167551
UUCCUGUCACUUCCUGUGUCUCCCAGGAGGGAGUCUGUCUGAAAGGACCAGGCAAAUGUUCUGUGGCCAGAGUGAUCACUCACUAGCCCUCUUCUGAGAACAGAAGGUGACAGCAUAC
...(((((((((.((((.((((..(((((((.((((((((....))).)))))......((((....))))((((....))))...)))))))..)))))))).)))))))))..... ( -49.30)
>rn3.chr6/107191778-107191661
UCCCUGUCUCCUCCUGUGUCUCCCAGGAAGGAUUCUGUCGAAAGGACCAGGCAAAUGUUCUGUGGCCAGAGUGAUCACUCACUUGCCUUCUUCUGGGAACAGAAGGUGACAGCAUAC
...(((((.(((.((((...((((((((.((.((((......))))))((((((....((((....))))((((....))))))))))..)))))))))))).))).)))))..... ( -45.40)
>canFam1.chr17/11168245-11168365
UCACCAACCCCUCCUGUGUCUCCCCGAGAGGAAUGCUGCCUAAGAGGACGGAGCAGAUGUUCUCUGGGCAGAGUGAUCAUUCAUCAGCCCCUCCUCUGGGAACAGGAGGUGACAGCACAU
.......(.((((((((...((((.((((((....(((((((.(((((((.......)))))))))))))).((((....)))).....))).))).)))))))))))).)......... ( -49.10)
>consensus
UCCCCGUCCCCUCCUGUGUCUCCCAG_GAGGAAUGCUGCCUAAAAGGACCAAGCAAAUGUUCUCUGGCCAGAGUGAUCACUCACCAG_CCCUCCUCUGGGAACAGAAGGUGACAGCAUAC
...(((((.((((((((.((((..((.((((....(((((....((((((.......))))))..)).))).((((....)))).....))))))..)))))))))))).)))))..... (-32.90 = -33.40 +   0.50) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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