Structure #112182

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	+
Position	207,070,241 - 207,070,359
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.42
Columns	120
Mean single MFE	-35.33
Consensus MFE	-25.22
Combinations/base pair	37 / 28 = 1.32
SCI	0.71
z-score	-2.85
RNA class probability	0.99811

This structure is part of cluster 59450

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.42
 Mean single sequence MFE: -35.33
 Consensus MFE: -25.22
 Energy contribution: -24.91
 Covariance contribution:  -0.31
 Mean z-score:  -2.85
 Structure conservation index:   0.71
 SVM decision value:   3.01
 SVM RNA-class probability: 0.998110
 Prediction: RNA

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>hg17.chr2/207070241-207070359
UCCACUCUGAAAACUUAUUUGUGCUAUCAAAACAUUGUCAAGAAUCUAGAUAGCUAGAGCCAGAUUUCUGGCAUUCAUGCCAGAUGCCAGAAGAUCUUUAGCUACUGACUAUCACUGG
.(((.(((((.......((((......))))......)).))).....(((((.((((((.((((((((((((((.......)))))))).))))))...))).))).)))))..))) ( -30.32)
>mm5.chr1/63788683-63788802
UCUACUCUGAAUUUUAUUUGUAGCAUCAAAGCAUUAAGCUAAGCACCUAGACAGCUAGGGCCAGAUUUCUGGCACCCAUGCCAGAUGCCACAGGGUCUUUGGCUAAUGACUGUCAUUGG
......(..((.....(((((.(((((..(((.....)))..((((((((....)))))(((((....))))).....)))..))))).)))))...))..)((((((.....)))))) ( -35.30)
>rn3.chr9/62206755-62206874
UCUACUCUGAAUUUUAUUUGUAGCAUCAAAGCAUGAAGUUAAGCAUCUAGACAGCUAGGGCCAGAUUUCUGGCCCCCAUGCCAGAUGCCACAGGGUCUUUGGCUAAUGACUGUCAUUGA
...((((((...........((((.(((.....))).)))).((((((.(.((....(((((((....)))))))...))).))))))..))))))(..((((........))))..). ( -37.80)
>canFam1.chr37/17919539-17919657
UCCACGCUGAAAACUUACUUGUGGCAUCAUAGCAUUAAGUCAAGAAUUUAGAUAGCUGGAGCCAAAUUUCUGGCAUUCAUAUCAAAUGCCAGAGAGCCUUUGGCCACUGGUUAUCAUC
.............((((((((..((......))..))))).)))......((((((..(.(((((((((((((((((.......)))))))))))...))))))..)..))))))... ( -37.90)
>consensus
UCCACUCUG_AAACUUAUUUGUAGCAUCAAAGCAUUAAGUCAAGAAUCUAGACAGCUAGAGCCAGAUUUCUGGCACCCAUGCCAGAUGCCACAGGGUCUUUGGCUAAUGACUAUCAUUGG
.((((...............))))..........................((((((...((((((((((((((((((.......)))))))))))...)))))))...).)))))..... (-25.22 = -24.91 +  -0.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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