Structure #112185

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	-
Position	207,070,241 - 207,070,359
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.42
Columns	120
Mean single MFE	-37.11
Consensus MFE	-23.28
Combinations/base pair	40 / 30 = 1.33
SCI	0.63
z-score	-2.82
RNA class probability	0.994358

This structure is part of cluster 59450

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.42
 Mean single sequence MFE: -37.12
 Consensus MFE: -23.28
 Energy contribution: -23.53
 Covariance contribution:   0.25
 Mean z-score:  -2.82
 Structure conservation index:   0.63
 SVM decision value:   2.47
 SVM RNA-class probability: 0.994358
 Prediction: RNA

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>hg17.chr2/207070359-207070241
CCAGUGAUAGUCAGUAGCUAAAGAUCUUCUGGCAUCUGGCAUGAAUGCCAGAAAUCUGGCUCUAGCUAUCUAGAUUCUUGACAAUGUUUUGAUAGCACAAAUAAGUUUUCAGAGUGGA
((...(((((..((.((((..((((.((((((((((......).)))))))))))))))))))..)))))...(((((.((.(((..((((......))))...))).))))))))). ( -36.50)
>mm5.chr1/63788802-63788683
CCAAUGACAGUCAUUAGCCAAAGACCCUGUGGCAUCUGGCAUGGGUGCCAGAAAUCUGGCCCUAGCUGUCUAGGUGCUUAGCUUAAUGCUUUGAUGCUACAAAUAAAAUUCAGAGUAGA
.....((((((.....((((.(..((....))..).)))).((((.(((((....)))))))))))))))(((((.....))))).((((((((...............)))))))).. ( -37.46)
>rn3.chr9/62206874-62206755
UCAAUGACAGUCAUUAGCCAAAGACCCUGUGGCAUCUGGCAUGGGGGCCAGAAAUCUGGCCCUAGCUGUCUAGAUGCUUAACUUCAUGCUUUGAUGCUACAAAUAAAAUUCAGAGUAGA
....(((..(((..........)))..(((((((((.((((((((((((((....))))))))(((.........)))......))))))..)))))))))........)))....... ( -41.30)
>canFam1.chr37/17919657-17919539
GAUGAUAACCAGUGGCCAAAGGCUCUCUGGCAUUUGAUAUGAAUGCCAGAAAUUUGGCUCCAGCUAUCUAAAUUCUUGACUUAAUGCUAUGAUGCCACAAGUAAGUUUUCAGCGUGGA
........((((..((((((.....((((((((((.....))))))))))..))))))..).(((....(((((....((((...((......))...)))).)))))..))).))). ( -33.20)
>consensus
CCAAUGACAGUCAGUAGCCAAAGACCCUCUGGCAUCUGGCAUGAAUGCCAGAAAUCUGGCCCUAGCUAUCUAGAUGCUUAACUUAAUGCUUUGAUGCCACAAAUAAAAUU_CAGAGUAGA
.............((((((((((.......(((((((((((((((.(((((....)))))))))..)))).)))))))..........)))))..))))).................... (-23.28 = -23.53 +   0.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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