Structure #112191

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Strand	-
Position	207,070,279 - 207,070,399
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.05
Columns	120
Mean single MFE	-33.46
Consensus MFE	-21.69
Combinations/base pair	36 / 28 = 1.29
SCI	0.65
z-score	-2.67
RNA class probability	0.993563

This structure is part of cluster 59450

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.05
 Mean single sequence MFE: -33.46
 Consensus MFE: -21.69
 Energy contribution: -22.38
 Covariance contribution:   0.69
 Mean z-score:  -2.67
 Structure conservation index:   0.65
 SVM decision value:   2.41
 SVM RNA-class probability: 0.993563
 Prediction: RNA

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>hg17.chr2/207070399-207070279
AAUAAGAUUAUCUUCUCACUUAUACUGACCUAAAGACUCUCCAGUGAUAGUCAGUAGCUAAAGAUCUUCUGGCAUCUGGCAUGAAUGCCAGAAAUCUGGCUCUAGCUAUCUAGAUUCUUG
..(((((..((((..........((((..............))))(((((..((.((((..((((.((((((((((......).)))))))))))))))))))..))))).))))))))) ( -33.54)
>mm5.chr1/63788838-63788722
AAUGAGACUACCUUCUCACACUGACCUAACCACUUUCCAAUGACAGUCAUUAGCCAAAGACCCUGUGGCAUCUGGCAUGGGUGCCAGAAAUCUGGCCCUAGCUGUCUAGGUGCUUA
..(((((......))))).....(((((.............((((((.....((((.(..((....))..).)))).((((.(((((....))))))))))))))))))))..... ( -35.31)
>rn3.chr9/62206910-62206794
AAUGAGACUACCUUCUCACACUGACCUAACCACUUUUCAAUGACAGUCAUUAGCCAAAGACCCUGUGGCAUCUGGCAUGGGGGCCAGAAAUCUGGCCCUAGCUGUCUAGAUGCUUA
..(((((......)))))..............((((..((((.....))))....)))).......(((((((((((..((((((((....))))))))...)).))))))))).. ( -37.10)
>canFam1.chr37/17919695-17919579
AAUAAAACUGCCUUCUCACUUACACUGACCUGAAGACUGAUGAUAACCAGUGGCCAAAGGCUCUCUGGCAUUUGAUAUGAAUGCCAGAAAUUUGGCUCCAGCUAUCUAAAUUCUUG
.......(((.(((((((.......)))...))))((((........))))(((((((.....((((((((((.....))))))))))..))))))).)))............... ( -27.90)
>consensus
AAUAAGACUACCUUCUCAC____ACUGACCUAAACACUUUCCAAUGACAGUCAGUAGCCAAAGACCCUCUGGCAUCUGGCAUGAAUGCCAGAAAUCUGGCCCUAGCUAUCUAGAUGCUUA
..(((((......)))))...........................((((((....(((((..((...((((((((((.....))))))))))..)))))))...)))))).......... (-21.69 = -22.38 +   0.69)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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