Structure #115080
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr20 |
| Strand | + |
| Position | 496,890 - 497,004 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 80.31 |
| Columns | 120 |
| Mean single MFE | -45.52 |
| Consensus MFE | -35.2 |
| Combinations/base pair | 35 / 29 = 1.21 |
| SCI | 0.77 |
| z-score | -2.06 |
| RNA class probability | 0.94434 |
This structure is part of cluster 61043
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 80.31 Mean single sequence MFE: -45.52 Consensus MFE: -35.20 Energy contribution: -35.08 Covariance contribution: -0.13 Mean z-score: -2.06 Structure conservation index: 0.77 SVM decision value: 1.32 SVM RNA-class probability: 0.944340 Prediction: RNA ###################################################################### >hg17.chr20/496890-497004 GGGCUAGGCAGCUGGACUAAUCGUCCAUUUCCCCCCGCCCGGAGGCCUCUUCCAGGCCCCCAGCUGCCCUGAUGGGCCAGGUCAGCCCCCCCCACAGGAGCCCCCAGCCGCUCC (((((.(((((((((((.....))))..............((.(((((.....))))).)))))))))(((.((((...((....))...))))))).)))))........... ( -50.00) >canFam1.chr24/27505979-27505860 GAGCCAGGCAGCAGGGCUAAUGGCCCAUUUCCCCCUGGUCUAUAGGCCUACUCUGGGCCCCCAGCUGCCCUGAUGGGCCAGGUUAGCCCCCCCCCCCCACGGGAGCCCCCAGCCACUCC (((...(((....((((((((((((((((.......((((....))))......((((........)))).)))))))))..)))))))...........(((....))).))).))). ( -48.70) >mm5.chr2/29432962-29432844 GGGCCAGGCAGCUGAACUAAUGGUCCAUUUCCCCUGACCCAAGGCCUCUUCUGGGCCCCCAGCUGCCCUGAUGGGCUAGGUCACCACCCCCCCUCCCGAAGAAGCCCCUUGUGACUCC ((((((((((((((.......((((..........))))...(((((.....)))))..)))))).))))..(((...(((....)))..)))..........))))........... ( -40.30) >rn3.chr3/28528460-28528345 GGGCCAGGCAACUGGACUAAUGGUCCAUUUCCCCUGACCCGAGGCCUCUUCUGGGCCCCCAGCUGCCCUGAUGGGCCAGGUCACCCCCCCUUUCGCAGAAGCCCCUUGUGACUCC (((.((((....(((((.....))))).....)))).)))..(((((..((.((((........)))).)).))))).((((((.....((((....))))......)))))).. ( -43.10) >consensus GGGCCAGGCAGCUGGACUAAUGGUCCAUUU__CCCCUGACCCGAGGCCUCUUCUGGGCCCCCAGCUGCCCUGAUGGGCCAGGUCAC___CCCCCCCCCCACAGAAGCCCCCAGCCACUCC ((((..(((((((((((.....))))..................(((((.....)))))...)))))))(((.((((...((.........))...)))))))..))))........... (-35.20 = -35.08 + -0.13)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
