Structure #115239
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr20 |
| Strand | - |
| Position | 1,222,094 - 1,222,210 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 75.42 |
| Columns | 120 |
| Mean single MFE | -44.38 |
| Consensus MFE | -31.93 |
| Combinations/base pair | 39 / 31 = 1.26 |
| SCI | 0.72 |
| z-score | -3.2 |
| RNA class probability | 0.999937 |
This structure is part of cluster 61099
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.42 Mean single sequence MFE: -44.38 Consensus MFE: -31.93 Energy contribution: -31.74 Covariance contribution: -0.19 Mean z-score: -3.20 Structure conservation index: 0.72 SVM decision value: 4.67 SVM RNA-class probability: 0.999937 Prediction: RNA ###################################################################### >hg17.chr20/1222210-1222094 UGCUCUCUCAGGUCCUCCCUCCCUUCUAGGCCCUAGCAAGGAGGCAGGUUGCCAUGGUGUUUGUCACCAUGCCACCUGCUUAGCCUGGAGUCCCGCAGGCCUCUCCCCAGGUGGCC (((.(((.(((((........((((((((...)))).))))((((((((.((.((((((.....)))))))).)))))))).))))))))....)))((((.((.....)).)))) ( -49.50) >mm5.chr2/30019121-30019237 UGUCUUCUUAACUCCUCCCUCUCAUCAUAGCCCGAGAGAGGAGGCAUGUUGCCAUGGCAUUUAUUGCCACGUUGCCUGUUCAGCCUGGAGUCCCACAGGCCUGUCCCCAGGCAGCU ........((((.((((((((((..........))))).)))))...))))...(((((.....))))).((((((((..(((((((........)))).)))....)))))))). ( -47.00) >rn3.chr3/29130059-29130175 CGUCCUCUCAACUCCUCCCUCUCAUCAUAGCCCCAGAGAGGAGGCAUGUUGCCAUGGCAUUCUCUGUCAUGUGGCCUGUUCGGCCUGGAGUCCCACAGGCCUGUCCCCAGGCAGCU ........((((.(((((.((((............)))))))))...))))((((((((.....))))))).)(((((..(((((((........)))))).)....))))).... ( -41.80) >canFam1.chr24/28100811-28100931 UGCCCUCUCAAGUCCUCCCUCCCUCUCCGGGCCCCAGAGAGGAGACAGGUUGCCAUAGUCUAUGUCACUAUGCCACCUGCCUUCUCCCCUGGAGUCCCACAGCCCUUUGCCCAGGCAGCC ((((........................((((.((((.((((((.(((((.((.(((((.......))))))).))))).))))))..)))).))))....((.....))...))))... ( -39.20) >consensus UGCCCUCUCAACUCCUCCCUCCCA_UCAUAGCCCCAGAGAGGAGGCAGGUUGCCAUGGCAUUUGUCACCAUGCCACCUGCUC___AGCCUGGAGUCCCACAGGCCUGUCCCCAGGCAGCC ............(((((.((((.......))....)).)))))(((.....)))((((((.....))))))((((((((.......(((((........))))).......)))))))). (-31.93 = -31.74 + -0.19)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
