Structure #115247

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	+
Position	1,222,171 - 1,222,289
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.85
Columns	120
Mean single MFE	-52.35
Consensus MFE	-32.74
Combinations/base pair	40 / 32 = 1.25
SCI	0.63
z-score	-2.65
RNA class probability	0.996605

This structure is part of cluster 61099

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.85
 Mean single sequence MFE: -52.35
 Consensus MFE: -32.74
 Energy contribution: -33.55
 Covariance contribution:   0.81
 Mean z-score:  -2.65
 Structure conservation index:   0.63
 SVM decision value:   2.72
 SVM RNA-class probability: 0.996605
 Prediction: RNA

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>hg17.chr20/1222171-1222289
UUGCUAGGGCCUAGAAGGGAGGGAGGACCUGAGAGAGCACAGGAUGCACACUGAGUUUUCUGAGUAGGAUCCUGAGAGGUGGCUCCCUUUGGGCCUGGGUGGCUUCUGCCCUCCCAUG
......(((((((((.(((((...((((((((((((((.(((........))).)))))))...)))).)))(....)....))))))))))))))(((.(((....)))..)))... ( -50.00)
>mm5.chr2/30019317-30019198
UCUCUCGGGCUAUGAUGAGAGGGAGGAGUUAAGAAGACACAGGACACUCACUGGGGCCUCUGAGCAGGAUCCUGAAGAGGAGGCACCCUAUGGGACUGGGUGGCUUCUGCCUUCCCAAG
(((((((.....))).))))((((((.((..(((((.(((.((...((((..(((((((((...(((....)))....)))))).)))..)))).))..))).)))))))))))))... ( -50.50)
>rn3.chr3/29130255-29130136
UCUCUGGGGCUAUGAUGAGAGGGAGGAGUUGAGAGGACGCAGGACACACACUGGGGCCUCUGGGCAGGAUCCUGAAGAAGAGGUACCCUGUGGGCCUGGGUGGCUUCUGCCUUCCCAAG
((((............))))((((((.((..(((((((.((((.(...(((.(((((((((...(((....)))....)))))).))).))).))))).))..)))))))))))))... ( -49.60)
>canFam1.chr24/28101002-28100891
UCUCUGGGGCCCGGAGAGGGAGGGAGGACUUGAGAGGGCACACCCAGGCUUCUGAGUAGGAUCCUGGAGAGGUGGCUCCCUUUGAGCCUGGGUGGCUUCUGUCCUCCCCUU
(((((((...)))))))(((.((((((((...(((((.(.(((((((((((..(((..((..(((....)))...))..))).)))))))))))))))))))))))))))) ( -59.30)
>consensus
UCUCUGGGGCCAUGA_AGAGAGGGAGGACUUGAGAGGACACAGGACACACACUGAGGCCUCUGAGCAGGAUCCUGAAGAGGAGGCACCCUUUGGGCCUGGGUGGCUUCUGCCCUCCCAAG
.................((((((((((((((.(((((.(.(((........))).).))))).)))....)))).....((((((..(((........)))..)))))).)))))))... (-32.74 = -33.55 +   0.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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