Structure #115250

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	-
Position	1,222,171 - 1,222,289
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.85
Columns	120
Mean single MFE	-41.7
Consensus MFE	-19.3
Combinations/base pair	29 / 26 = 1.12
SCI	0.46
z-score	-2.37
RNA class probability	0.626558

This structure is part of cluster 61099

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.85
 Mean single sequence MFE: -41.70
 Consensus MFE: -19.30
 Energy contribution: -21.68
 Covariance contribution:   2.38
 Mean z-score:  -2.37
 Structure conservation index:   0.46
 SVM decision value:   0.19
 SVM RNA-class probability: 0.626558
 Prediction: RNA

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>hg17.chr20/1222289-1222171
CAUGGGAGGGCAGAAGCCACCCAGGCCCAAAGGGAGCCACCUCUCAGGAUCCUACUCAGAAAACUCAGUGUGCAUCCUGUGCUCUCUCAGGUCCUCCCUCCCUUCUAGGCCCUAGCAA
...(((((((.((..(((.....)))((..(((((((.......(((((((.((((.((....)).)))).).)))))).)))))))..))..)))))))))......((....)).. ( -41.80)
>mm5.chr2/30019198-30019317
CUUGGGAAGGCAGAAGCCACCCAGUCCCAUAGGGUGCCUCCUCUUCAGGAUCCUGCUCAGAGGCCCCAGUGAGUGUCCUGUGUCUUCUUAACUCCUCCCUCUCAUCAUAGCCCGAGAGA
.((((((((((((.((.(((((.........))))).)).)....((((((...(((((..(....)..)))))))))))))))))))))).......(((((..........))))). ( -38.30)
>rn3.chr3/29130136-29130255
CUUGGGAAGGCAGAAGCCACCCAGGCCCACAGGGUACCUCUUCUUCAGGAUCCUGCCCAGAGGCCCCAGUGUGUGUCCUGCGUCCUCUCAACUCCUCCCUCUCAUCAUAGCCCCAGAGA
...((((.(((....)))((.(((((.((((.((..(((((....(((....)))...)))))..))..)))).).)))).))............))))((((............)))) ( -36.10)
>canFam1.chr24/28100891-28101002
AAGGGGAGGACAGAAGCCACCCAGGCUCAAAGGGAGCCACCUCUCCAGGAUCCUACUCAGAAGCCUGGGUGUGCCCUCUCAAGUCCUCCCUCCCUCUCCGGGCCCCAGAGA
..((((((((((((.(((((((((((((..((((((......))))((....)).))..).)))))))))).))..)))...)))))))))...((((.((...)).)))) ( -50.60)
>consensus
CAUGGGAAGGCAGAAGCCACCCAGGCCCAAAGGGAGCCACCUCUUCAGGAUCCUACUCAGAAGCCCCAGUGUGUGUCCUGUGCCCUCUCAACUCCUCCCUCCCA_UCAUAGCCCCAGAGA
...((((((((....(((.....))).....((((.((.........)).))))....(((((.(.(((........))).).)))))...))))))))..................... (-19.30 = -21.68 +   2.38) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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