Structure #115255

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	+
Position	1,222,210 - 1,222,328
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.61
Columns	120
Mean single MFE	-55.55
Consensus MFE	-36.69
Combinations/base pair	36 / 29 = 1.24
SCI	0.66
z-score	-3.14
RNA class probability	0.997673

This structure is part of cluster 61099

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.61
 Mean single sequence MFE: -55.55
 Consensus MFE: -36.69
 Energy contribution: -36.82
 Covariance contribution:   0.13
 Mean z-score:  -3.14
 Structure conservation index:   0.66
 SVM decision value:   2.91
 SVM RNA-class probability: 0.997673
 Prediction: RNA

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>hg17.chr20/1222210-1222328
CAGGAUGCACACUGAGUUUUCUGAGUAGGAUCCUGAGAGGUGGCUCCCUUUGGGCCUGGGUGGCUUCUGCCCUCCCAUGAGGGACCCUGCCUGCAAGGUCCCAUCCCAGCAGGGGAAA
((((((.(..(((.((....)).))).).)))))).........((((((((((..((((.(((....)))..))))...((((((.((....)).))))))..))))).)))))... ( -51.10)
>mm5.chr2/30019356-30019237
CAGGACACUCACUGGGGCCUCUGAGCAGGAUCCUGAAGAGGAGGCACCCUAUGGGACUGGGUGGCUUCUGCCUUCCCAAGAGGGACCCUGCCUGUGAGGUCCCAUCCCAGCAGGGGAAA
..((((.(((((.(((((((((...(((....)))....)))))).)))...(((...(((((((....)))..(((....)))))))..))))))))))))..((((.....)))).. ( -58.20)
>rn3.chr3/29130294-29130175
CAGGACACACACUGGGGCCUCUGGGCAGGAUCCUGAAGAAGAGGUACCCUGUGGGCCUGGGUGGCUUCUGCCUUCCCAAGAGGGACCCUGCCUGUGAGGUCCCAUCCCAGCAGGGGAAA
............(((((((((((((((((.((((.......((((.((....))))))(((.(((....)))..)))....)))).)))))))).)))))))))((((.....)))).. ( -57.90)
>canFam1.chr24/28101041-28100930
CACCCAGGCUUCUGAGUAGGAUCCUGGAGAGGUGGCUCCCUUUGAGCCUGGGUGGCUUCUGUCCUCCCCUUAGGGACAGCCACCUGCAAGGUCCUGUCCCAGUAGGGGAA
(((((((((((..(((..((..(((....)))...))..))).)))))))))))..........((((((..(((((((..(((.....))).)))))))...)))))). ( -55.00)
>consensus
CAGGACACACACUGAGGCCUCUGAGCAGGAUCCUGAAGAGGAGGCACCCUUUGGGCCUGGGUGGCUUCUGCCCUCCCAAGAGGGACC_CUGCCUGCAAGGUCCCAUCCCAGCAGGGGAAA
................((((((...(((....)))....)))))).(((((((((...(((.(((....)))..)))....(((((.............)))))..))))).)))).... (-36.69 = -36.82 +   0.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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