Structure #115846

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	-
Position	9,601,749 - 9,601,868
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.91
Columns	120
Mean single MFE	-30.33
Consensus MFE	-21.36
Combinations/base pair	41 / 28 = 1.46
SCI	0.7
z-score	-3.21
RNA class probability	0.995524

This structure is part of cluster 61411

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  74.51
 Mean single sequence MFE: -30.33
 Consensus MFE: -21.36
 Energy contribution: -20.17
 Covariance contribution:  -1.19
 Mean z-score:  -3.21
 Structure conservation index:   0.70
 SVM decision value:   4.87
 SVM RNA-class probability: 0.999957
 Prediction: RNA

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>hg17.chr20/9601868-9601749
ACACAUUAAGGAUUAGGUGCCAGGUUUCUUCCAUCUGUUAUAACAGGAAGGCCAACUGGUAUUUUGUAGUUAUUUUAAGUGUAAUAAUAUGUCAAACACACUAAAAACAUUCUAUGUCU
.........((((.(((((((((...((((((...(((....)))))))))....))))))))).((((...((((.(((((...............))))).))))....)))))))) ( -22.86)
>mm5.chr2/135958412-135958296
ACACAUUAAGGAUGAGGUGCUAGGUUCCUUCCAUCUGUUAAAGAUGGAAGGACAACUGGUAUUUUGCAGUCAUUUUAAAUUCAAUAAGAUGUCCAAACAAGAAAAAUAUCCCAUCU
.........(((((.((((((((..(((((((((((.....)))))))))))...))))))(((((..(.(((((((.......))))))).)....))))).......))))))) ( -36.30)
>rn3.chr3/124189840-124189724
ACACAUGAAGGAUGGGGUGCCAGGUUCCUUCCAUCUGUUAUAACAGGAAGGACAACUGGUAUUUUGUAGUUAUUUUAAAUUCAAGAAGAUGUCAAAACAAGAAAAACAUCCCAUCU
.........((((((((((((((..(((((((...(((....))))))))))...))))..((((((...((((((.........)))))).....))))))....)))))))))) ( -34.30)
>canFam1.chr24/35166200-35166320
ACACAUUAAAGAUAAGGUGUCAGUUUCUUUCCAUCUGUUAUAAUAGGAAGGACAACUGGCGUUUUAUAAUUAUUUUAAAUAUAAUAGGAUGUCAAACACACUAAAAAACAUUCUAUGUCU
......(((..((((..(((((((((((((((.............))))))).))))))))..))))..)))...........(((((((((...............))))))))).... ( -27.88)
>consensus
ACACAUUAAGGAUGAGGUGCCAGGUUCCUUCCAUCUGUUAUAACAGGAAGGACAACUGGUAUUUUGUAGUUAUUUUAAAUUCAAUAAGAUGUCAAA_ACAAGAAAAA_CAUCCCAU__CU
.........((((((((((((((..(((((((.............)))))))...))))))))))))...(((((((.......))))))).....................))...... (-21.36 = -20.17 +  -1.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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