Structure #116252
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr20 |
| Strand | + |
| Position | 13,295,621 - 13,295,741 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 87.36 |
| Columns | 120 |
| Mean single MFE | -23.6 |
| Consensus MFE | -16.99 |
| Combinations/base pair | 33 / 29 = 1.14 |
| SCI | 0.72 |
| z-score | -1.55 |
| RNA class probability | 0.592004 |
This structure is part of cluster 61640
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.36 Mean single sequence MFE: -23.60 Consensus MFE: -16.99 Energy contribution: -18.05 Covariance contribution: 1.06 Mean z-score: -1.55 Structure conservation index: 0.72 SVM decision value: 0.12 SVM RNA-class probability: 0.592004 Prediction: RNA ###################################################################### >hg17.chr20/13295621-13295741 ACCACCAUUCAGCUCUUGCUAAGCCUUGGGCAUUGUAGCUAAUCAUUUAGUAACAUUGAAAGGCUCCUUUUAUGGAGGCUUCCCCAUCAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGC .................((((((...((((((.(((.(((((....))))).))).)).(((.((((......)))).))).)))).....((((....))))...........)))))) ( -26.10) >mm5.chr2/139570690-139570805 ACCACCUCCCAGAUCUUGCUAAAUCUUAGGAGUUGUAGCACUCAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCUACAAUCAAUGAACUCAUUUUAUGUAAAUAUUUAGC ....(((((.((((........)))).(((((((.......(((((...)))))..))))))).....)))))......((((...((((....))))...)))).......... ( -19.80) >rn3.chr3/127895705-127895825 ACCACCUCCCAGCUCUUGCUAAACCUUGGGAGUUGUAACUAAUCAGUUAGUAACAUUGAAAGGCUCCUUUUAUGGAGGCUUCCCUACAAUCAAUGAACUCAUUUUAUGUAAAUAUUUAGC .................((((((....(((((((((((((....))))).))))......((.((((......)))).))))))((((...((((....))))...))))....)))))) ( -26.90) >canFam1.chr24/38445192-38445076 ACCACCACCUAGCUCUCGCUAAGCCUUAGGCGUUGUAGCUAAUCAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCCACCAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGC .................((((((((...))).(((((...(((.(((..(((((((((.((((......)))).)))........)))))).))).)))...)))))....))))) ( -21.60) >consensus ACCACCACCCAGCUCUUGCUAAACCUUAGGAGUUGUAGCUAAUCA_UUAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCCACAAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGC .................((((((...((((...(((.(((((....))))).)))....(((.((((......)))).))).)))).....((((....))))...........)))))) (-16.99 = -18.05 + 1.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
