Structure #116254
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr20 |
| Strand | - |
| Position | 13,295,621 - 13,295,741 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 87.36 |
| Columns | 120 |
| Mean single MFE | -31.8 |
| Consensus MFE | -24.65 |
| Combinations/base pair | 44 / 35 = 1.26 |
| SCI | 0.78 |
| z-score | -2.17 |
| RNA class probability | 0.90653 |
This structure is part of cluster 61640
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.36 Mean single sequence MFE: -31.80 Consensus MFE: -24.65 Energy contribution: -25.03 Covariance contribution: 0.38 Mean z-score: -2.17 Structure conservation index: 0.78 SVM decision value: 1.05 SVM RNA-class probability: 0.906530 Prediction: RNA ###################################################################### >hg17.chr20/13295741-13295621 GCUAAAUAUUUAUAUAAAAUGAGUUCAUUGAUGAUGGGGAAGCCUCCAUAAAAGGAGCCUUUCAAUGUUACUAAAUGAUUAGCUACAAUGCCCAAGGCUUAGCAAGAGCUGAAUGGUGGU (((((.((((((.....((((....))))..((((..(((((.((((......)))).)))))...)))).)))))).)))))......(((...(((((.....)))))....)))... ( -28.20) >mm5.chr2/139570805-139570690 GCUAAAUAUUUACAUAAAAUGAGUUCAUUGAUUGUAGGGAAGCCUCCAUAAAAGGAGUCUUUCAAUGUUACUGAGUGCUACAACUCCUAAGAUUUAGCAAGAUCUGGGAGGUGGU (((.((((((((((...((((....))))...)))).(((((.((((......)))).)))))))))))....)))(((((..((((((.(((((....)))))))))))))))) ( -32.10) >rn3.chr3/127895825-127895705 GCUAAAUAUUUACAUAAAAUGAGUUCAUUGAUUGUAGGGAAGCCUCCAUAAAAGGAGCCUUUCAAUGUUACUAACUGAUUAGUUACAACUCCCAAGGUUUAGCAAGAGCUGGGAGGUGGU ((((.....(((((...((((....))))...)))))(((((.((((......)))).)))))..(((.(((((....))))).))).((((((.(.(((....))).))))))).)))) ( -32.10) >canFam1.chr24/38445076-38445192 GCUAAAUAUUUAUAUAAAAUGAGUUCAUUGAUGGUGGGGAAGCCUCCAUAAAAGGAGUCUUUCAAUGUUACUGAUUAGCUACAACGCCUAAGGCUUAGCGAGAGCUAGGUGGUGGU (((((..((((((.....))))))(((.(((((....(((((.((((......)))).)))))..))))).)))))))).....((((....(((((((....))))))))))).. ( -34.80) >consensus GCUAAAUAUUUACAUAAAAUGAGUUCAUUGAUGGUAGGGAAGCCUCCAUAAAAGGAGCCUUUCAAUGUUACUAA_UGAUUAGCUACAACGCCCAAGGCUUAGCAAGAGCUGGGAGGUGGU (((((....(((((...((((....))))...)))))(((((.((((......)))).)))))...............)))))..((.((((((..((((.....)))))))))).)).. (-24.65 = -25.03 + 0.38)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
