Structure #116255
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr20 |
| Strand | + |
| Position | 13,295,661 - 13,295,781 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 91.53 |
| Columns | 120 |
| Mean single MFE | -21.36 |
| Consensus MFE | -18.84 |
| Combinations/base pair | 24 / 23 = 1.04 |
| SCI | 0.88 |
| z-score | -1.32 |
| RNA class probability | 0.509503 |
This structure is part of cluster 61640
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 91.53 Mean single sequence MFE: -21.35 Consensus MFE: -18.84 Energy contribution: -18.90 Covariance contribution: 0.06 Mean z-score: -1.32 Structure conservation index: 0.88 SVM decision value: -0.05 SVM RNA-class probability: 0.509503 Prediction: RNA ###################################################################### >hg17.chr20/13295661-13295781 AAUCAUUUAGUAACAUUGAAAGGCUCCUUUUAUGGAGGCUUCCCCAUCAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGCUAGGCAAUAAACUGGACAGCCUAUAUUACUCAACAUCAGC ........((((((((((((((.((((......)))).)))........)))))).........................(((((.............)))))..))))).......... ( -21.02) >mm5.chr2/139570727-139570845 CACUCAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCUACAAUCAAUGAACUCAUUUUAUGUAAAUAUUUAGCCAGGCAAUAAACCGGACAGCCUAUAUUACUCAACAGCAGC .....((((((((.(((((....)))))))).((((((((.((((...((((....))))...))))............((.......))))).)))))...))))).......... ( -19.80) >rn3.chr3/127895745-127895865 AAUCAGUUAGUAACAUUGAAAGGCUCCUUUUAUGGAGGCUUCCCUACAAUCAAUGAACUCAUUUUAUGUAAAUAUUUAGCCAGGCAAUAAACUGGACGGCCUAUAUUACUCAACAGCAGC .....(((((((((((.(((((....)))))))).(((((....((((...((((....))))...))))........(((((........)))).))))))...))))).)))...... ( -25.20) >canFam1.chr24/38445232-38445116 AAUCAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCCACCAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGCCAGGCAAUAAACUGGACAGCCUAUAUUACUCAACAUCAGU ....((((((((((((((.((((......)))).)))........)))))).......................(((((........)))).)........))))).......... ( -19.40) >consensus AAUCA_UUAGUAACAUUGAAAGACUCCUUUUAUGGAGGCUUCCCCACAAUCAAUGAACUCAUUUUAUAUAAAUAUUUAGCCAGGCAAUAAACUGGACAGCCUAUAUUACUCAACAGCAGC ........((((((((((((((.((((......)))).)))........)))))).......................(((((........)))).)........))))).......... (-18.84 = -18.90 + 0.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
