Structure #116615

Summary

Genome/Assembly hg17
Chromosome/Contig chr20
Strand -
Position 17,891,450 - 17,891,570
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 83.82
Columns 120
Mean single MFE -42.88
Consensus MFE -39.97
Combinations/base pair 45 / 32 = 1.41
SCI 0.93
z-score -3.02
RNA class probability 0.998348

This structure is part of cluster 61845

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.82
 Mean single sequence MFE: -42.88
 Consensus MFE: -39.97
 Energy contribution: -37.73
 Covariance contribution:  -2.25
 Mean z-score:  -3.02
 Structure conservation index:   0.93
 SVM decision value:   3.07
 SVM RNA-class probability: 0.998348
 Prediction: RNA

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>hg17.chr20/17891570-17891450
UAUCCAUUCGCUGAGUGCGCUGCACUGACCUUCUUCCAAGCCUCAGUUCCUGUUCUAGGAACUUGAGGCUAUGUAGCCUGAAAAUGCCCUGCAGUCUGCAGUGUUCUACUGUGAACUGCU
......(((((..((.((((((((..(((.........((((((((((((((...))))))).))))))).((((((.(....).))..))))))))))))))).))...)))))..... ( -43.50)
>mm5.chr2/144018176-144018059
UAUCCAUUCGCUGAGUACGCUGCUCUGACCUUCUUCCCAGUCUCGGUUCCUGUUCUGGGAGCUUGGGGCUGAGUAGCCACCAGCCCUGCUCUCUGCAGUGUUCUAUUGUGGAUUGCU
.((((((..((((.((..(((((((...(((..(((((((...(((...)))..)))))))...)))...))))))).)))))).((((.....)))).........)))))).... ( -44.00)
>rn3.chr3/132699013-132698896
UAUCCAUUCGCUGAGUACGCUGCACUGACCUUCUUCCCAGUCCCAGUUCCUGUUCUGGGAGCUUGGGGCUGAGUAGCCUCCAACCCUGCAAUCUGCAGUGUUCUACUGUGGAUUGCU
............(((...(((((...((......)).((((((((((((((.....)))))).)))))))).)))))))).......((((((..(((((...)))))..)))))). ( -45.70)
>canFam1.chr24/42629005-42629125
UAUCCAUUCGCUGAGUGCACUGUACUGACCUUCUUCCAAGCCUUGGUUCCUGUUCUAGGAACUCGGGGCUACGUAGCCUCCAAAUGCCCUGCAGUUUGCGGUGUUCUACCGUGGACAGCU
.........(((((((((...)))))............((((((((((((((...))))))).)))))))...)))).............((.(((..(((((...)))))..))).)). ( -38.30)
>consensus
UAUCCAUUCGCUGAGUACGCUGCACUGACCUUCUUCCAAGCCUCAGUUCCUGUUCUAGGAACUUGGGGCUAAGUAGCC___AAAAGCCCUGCAGUCUGCAGUGUUCUACUGUGGACUGCU
......(((((..((.(((((((..............((((((((((((((.....)))))).)))))))).((((............)))).....))))))).))...)))))..... (-39.97 = -37.73 +  -2.25) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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